Expression of 1-1-6.4.19.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.016680.811
27DAP/17DAP0.989271
39DAP/27DAP2.43310.025
41DAP/39DAP1.721470.326
42DAP/41DAP2.66030.026
43DAP/42DAP1.763410.698
47DAP/43DAP1.628940.497
52DAP/47DAP0.7830.479
57DAP/52DAP1.655150.927

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.537840.105
17DAP/reference1.142180.059
27DAP/reference1.825930.009
39DAP/reference1.335390.022
41DAP/reference1.174070.085
42DAP/reference1.683570.01
43DAP/reference1.522730.009
47DAP/reference2.193910.023
52DAP/reference3.672160.007
57DAP/reference3.340340.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.959080.595
27DAP/17DAP0.990860.943
39DAP/27DAP1.116510.596
41DAP/39DAP1.150831
42DAP/41DAP1.302040.508
43DAP/42DAP0.799490.032
47DAP/43DAP0.931340.701
52DAP/47DAP2.654570.037
57DAP/52DAP1.991250.054
57DAP/7DAP3.632731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041461
17DAP/reference0.932680.338
27DAP/reference1.278030.131
39DAP/reference1.068441
41DAP/reference1.388570.027
42DAP/reference1.063340.686
43DAP/reference1.003920.694
47DAP/reference1.183930.561
52DAP/reference0.788450.066
57DAP/reference0.728860.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.903460.475
17DAP/reference1.051031
27DAP/reference1.383560.139
39DAP/reference1.848290.011
41DAP/reference2.24250.005
42DAP/reference1.747190.007
43DAP/reference0.801860.09
47DAP/reference1.252160.041
52DAP/reference1.533820.009
57DAP/reference1.098540.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.838370.104
17DAP/reference1.165020.675
27DAP/reference1.11490.131
39DAP/reference0.980360.643
41DAP/reference1.210190.397
42DAP/reference1.338670.18
43DAP/reference1.635070.064
47DAP/reference1.27120.048
52DAP/reference1.240510.262
57DAP/reference3.676240.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.19290.966
26DAP/20DAP6.765120.259
34DAP/26DAP2.46241
51DAP/34DAP0.988350.924
52DAP/51DAP1.98480.044
53DAP/52DAP0.966720.848
55DAP/53DAP1.121810.366
57DAP/55DAP0.559270.073
62DAP/57DAP0.982310.994
68DAP/62DAP2.039370.926
68DAP/14DAP2.004370.035

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.09718

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.176590.016
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.15073
Mature Eggplant/Ripe Tomato0.113450.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.289210.877
1-1-2/M821.364451
12-2/M821.039011
12-4/M821.602891
1-3/M822.283390.277
2-1-1/M820.96960.683
2-1/M820.870540.345
2-6/M820.977011
3-2/M820.19330.334
4-1-1/M821.273641
4-1/M821.487790.853
4-3-2/M821.239971
4-3/M821.044971
5-3/M821.031121
6-2/M821.26831
6-3/M820.754620.433
7-1/M821.03431
7-2/M821.277051
9-3-2/M821.34181

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.528110.277
IL2-6/WTpooled1.53020.419
IL7-5/WTpooled0.726821
IL7-3/WTpooled1.212821
IL12-4/WTpooled1.341510.624
IL1-4/WTpooled0.869590.476
WT/WTpooled1.02021

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.101781

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.040910.921
DC3000/delta hrp 6h1.14302
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.742430.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.414790.29
DC3000 delta B/DC3000 delta AB1.120280.484

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.036541
Var 0h3.420191
Var 12h I row2-row10.968530.948
Var 12h NI row2-row11.133620.649
Var 36h I row2-row11.009451
Var 36h NI row2-row11.66460.482
Var 60h I row2-row10.610220.285
Var 60h NI row2-row11.185481
Time course 0hI-0hNI0.870660.379
Time course 12hI-12hNI1.042031
Time course 36hI-36hNI1.12541
Time course 60hI-60hNI1.701780.013

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.330240.257
transgenic ySAMdc/azygous control (breaker)1.966321
transgenic ySAMdc/azygous control (red)1.655621

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.898650.201

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.318470.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.291110.164