Expression of 1-1-6.4.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06867 | 0.786 |
27DAP/17DAP | 1.10822 | 0.873 |
39DAP/27DAP | 0.7793 | 0.41 |
41DAP/39DAP | 1.54861 | 0.372 |
42DAP/41DAP | 0.87185 | 1 |
43DAP/42DAP | 0.96304 | 0.877 |
47DAP/43DAP | 0.98315 | 0.92 |
52DAP/47DAP | 1.30893 | 0.468 |
57DAP/52DAP | 1.11511 | 0.873 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09779 | 0.32 |
17DAP/reference | 0.97647 | 0.567 |
27DAP/reference | 0.98806 | 0.668 |
39DAP/reference | 1.00753 | 0.842 |
41DAP/reference | 1.02974 | 0.48 |
42DAP/reference | 1.06581 | 0.103 |
43DAP/reference | 0.94912 | 0.155 |
47DAP/reference | 0.99952 | 0.764 |
52DAP/reference | 1.23199 | 0.056 |
57DAP/reference | 0.92166 | 0.138 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09798 | 0.569 |
27DAP/17DAP | 0.97794 | 0.821 |
39DAP/27DAP | 1.01228 | 0.793 |
41DAP/39DAP | 1.10303 | 0.663 |
42DAP/41DAP | 1.02972 | 0.893 |
43DAP/42DAP | 0.9799 | 0.684 |
47DAP/43DAP | 0.98488 | 0.909 |
52DAP/47DAP | 1.02087 | 0.919 |
57DAP/52DAP | 1.02616 | 0.864 |
57DAP/7DAP | 1.03466 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24488 | |
17DAP/reference | 1.22015 | |
27DAP/reference | 1.32524 | 0.014 |
39DAP/reference | 0.99542 | |
41DAP/reference | 1.06782 | 0.27 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.55434 | |
47DAP/reference | 1.07556 | 0.37 |
52DAP/reference | 1.30966 | |
57DAP/reference | 1.12716 | |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04845 | 0.589 |
17DAP/reference | 1.10234 | 0.171 |
27DAP/reference | 1.12339 | 0.373 |
39DAP/reference | 1.17316 | 0.194 |
41DAP/reference | 1.04019 | 0.831 |
42DAP/reference | 1.07514 | 0.324 |
43DAP/reference | 1.11022 | 0.242 |
47DAP/reference | 0.99486 | 0.678 |
52DAP/reference | 1.08365 | 0.106 |
57DAP/reference | 1.11415 | 0.277 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04857 | |
17DAP/reference | 1.03011 | 0.665 |
27DAP/reference | 1.17079 | 0.298 |
39DAP/reference | 1.12126 | 0.254 |
41DAP/reference | 1.1292 | 0.047 |
42DAP/reference | 1.30714 | 0.103 |
43DAP/reference | 1.07774 | 0.688 |
47DAP/reference | 1.00509 | 1 |
52DAP/reference | 1.10013 | 0.384 |
57DAP/reference | 1.1956 | 0.055 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9596 | 1 |
26DAP/20DAP | 0.97093 | 0.317 |
34DAP/26DAP | 0.98114 | 0.972 |
51DAP/34DAP | 0.95327 | 0.618 |
52DAP/51DAP | 0.98546 | 1 |
53DAP/52DAP | 1.03031 | 0.819 |
55DAP/53DAP | 0.99865 | 0.939 |
57DAP/55DAP | 1.07203 | 0.793 |
62DAP/57DAP | 0.98803 | 0.994 |
68DAP/62DAP | 0.82919 | 0.406 |
68DAP/14DAP | 0.99772 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94269 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.79847 | 0.254 |
Mature Green Tomato/Ripe Tomato | 0.74732 | 0.079 |
Immature Eggplant/Mature Eggplant | 1.30918 | 0.105 |
Ripe Pepper/Ripe Tomato | 0.80614 | 1 |
Mature Eggplant/Ripe Tomato | 0.84612 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06547 | 1 |
1-1-2/M82 | 0.82523 | 1 |
12-2/M82 | 1.01119 | 1 |
12-4/M82 | 0.91082 | 1 |
1-3/M82 | 0.90737 | 0.501 |
2-1-1/M82 | 1.17634 | 0.689 |
2-1/M82 | 1.25012 | 1 |
2-6/M82 | 1.012 | 1 |
3-2/M82 | 0.99301 | 1 |
4-1-1/M82 | 1.027 | 1 |
4-1/M82 | 1.08172 | 0.466 |
4-3-2/M82 | 0.83759 | 0.698 |
4-3/M82 | 1.02142 | 1 |
5-3/M82 | 1.0415 | 0.467 |
6-2/M82 | 1.00574 | 1 |
6-3/M82 | 0.97898 | |
7-1/M82 | 0.91679 | 0.452 |
7-2/M82 | 1.10263 | 0.324 |
9-3-2/M82 | 0.82414 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.11466 | |
IL2-6/WTpooled | 0.72309 | 1 |
IL7-5/WTpooled | 1.00471 | 1 |
IL7-3/WTpooled | 1.30371 | 1 |
IL12-4/WTpooled | 0.98256 | 1 |
IL1-4/WTpooled | 0.94901 | 0.834 |
WT/WTpooled | 1.00633 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.65921 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04856 | 0.921 |
DC3000/delta hrp 6h | 0.87497 | 0.95 |
DC3000/delta hrp 12h | 0.9298 | 1 |
DC3000/delta hrp 24h | 1.04072 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.02139 | 0.441 |
DC3000 delta B/DC3000 delta AB | 1.01756 | 0.714 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93864 | 1 |
Exp 36h | 1.45058 | 0.693 |
Exp 60h | 1.44256 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01744 | 1 |
Var 0h | 1.44378 | 0.98 |
Var 12h I row2-row1 | 1.12407 | 0.379 |
Var 12h NI row2-row1 | 1.0892 | 1 |
Var 36h I row2-row1 | 0.77267 | 0.805 |
Var 36h NI row2-row1 | 0.85367 | 0.549 |
Var 60h I row2-row1 | 1.09168 | 1 |
Var 60h NI row2-row1 | 1.11826 | 0.904 |
Time course 0hI-0hNI | 1.084 | 0.719 |
Time course 12hI-12hNI | 1.03035 | 0.85 |
Time course 36hI-36hNI | 0.96988 | 0.23 |
Time course 60hI-60hNI | 1.09434 | 0.426 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93574 | 0.301 |
transgenic ySAMdc/azygous control (breaker) | 0.88964 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.90333 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02425 | 0.155 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.66937 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.01084 | 1 |
Manapal/WT (break) | 1.01674 | 1 |
Manapal/WT (red) | 1.62554 | 0.222 |
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