Expression of 1-1-6.4.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.068670.786
27DAP/17DAP1.108220.873
39DAP/27DAP0.77930.41
41DAP/39DAP1.548610.372
42DAP/41DAP0.871851
43DAP/42DAP0.963040.877
47DAP/43DAP0.983150.92
52DAP/47DAP1.308930.468
57DAP/52DAP1.115110.873

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.097790.32
17DAP/reference0.976470.567
27DAP/reference0.988060.668
39DAP/reference1.007530.842
41DAP/reference1.029740.48
42DAP/reference1.065810.103
43DAP/reference0.949120.155
47DAP/reference0.999520.764
52DAP/reference1.231990.056
57DAP/reference0.921660.138

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.097980.569
27DAP/17DAP0.977940.821
39DAP/27DAP1.012280.793
41DAP/39DAP1.103030.663
42DAP/41DAP1.029720.893
43DAP/42DAP0.97990.684
47DAP/43DAP0.984880.909
52DAP/47DAP1.020870.919
57DAP/52DAP1.026160.864
57DAP/7DAP1.034661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.24488
17DAP/reference1.22015
27DAP/reference1.325240.014
39DAP/reference0.99542
41DAP/reference1.067820.27
42DAP/referenceN/AN/A
43DAP/reference1.55434
47DAP/reference1.075560.37
52DAP/reference1.30966
57DAP/reference1.12716

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.048450.589
17DAP/reference1.102340.171
27DAP/reference1.123390.373
39DAP/reference1.173160.194
41DAP/reference1.040190.831
42DAP/reference1.075140.324
43DAP/reference1.110220.242
47DAP/reference0.994860.678
52DAP/reference1.083650.106
57DAP/reference1.114150.277

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04857
17DAP/reference1.030110.665
27DAP/reference1.170790.298
39DAP/reference1.121260.254
41DAP/reference1.12920.047
42DAP/reference1.307140.103
43DAP/reference1.077740.688
47DAP/reference1.005091
52DAP/reference1.100130.384
57DAP/reference1.19560.055

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.95961
26DAP/20DAP0.970930.317
34DAP/26DAP0.981140.972
51DAP/34DAP0.953270.618
52DAP/51DAP0.985461
53DAP/52DAP1.030310.819
55DAP/53DAP0.998650.939
57DAP/55DAP1.072030.793
62DAP/57DAP0.988030.994
68DAP/62DAP0.829190.406
68DAP/14DAP0.997721

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.942690.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.798470.254
Mature Green Tomato/Ripe Tomato0.747320.079
Immature Eggplant/Mature Eggplant1.309180.105
Ripe Pepper/Ripe Tomato0.806141
Mature Eggplant/Ripe Tomato0.846120.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.065471
1-1-2/M820.825231
12-2/M821.011191
12-4/M820.910821
1-3/M820.907370.501
2-1-1/M821.176340.689
2-1/M821.250121
2-6/M821.0121
3-2/M820.993011
4-1-1/M821.0271
4-1/M821.081720.466
4-3-2/M820.837590.698
4-3/M821.021421
5-3/M821.04150.467
6-2/M821.005741
6-3/M820.97898
7-1/M820.916790.452
7-2/M821.102630.324
9-3-2/M820.824140.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.11466
IL2-6/WTpooled0.723091
IL7-5/WTpooled1.004711
IL7-3/WTpooled1.303711
IL12-4/WTpooled0.982561
IL1-4/WTpooled0.949010.834
WT/WTpooled1.006331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.659210.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.048560.921
DC3000/delta hrp 6h0.874970.95
DC3000/delta hrp 12h0.92981
DC3000/delta hrp 24h1.040720.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.021390.441
DC3000 delta B/DC3000 delta AB1.017560.714

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.938641
Exp 36h1.450580.693
Exp 60h1.442560.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017441
Var 0h1.443780.98
Var 12h I row2-row11.124070.379
Var 12h NI row2-row11.08921
Var 36h I row2-row10.772670.805
Var 36h NI row2-row10.853670.549
Var 60h I row2-row11.091681
Var 60h NI row2-row11.118260.904
Time course 0hI-0hNI1.0840.719
Time course 12hI-12hNI1.030350.85
Time course 36hI-36hNI0.969880.23
Time course 60hI-60hNI1.094340.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.935740.301
transgenic ySAMdc/azygous control (breaker)0.889640.49
transgenic ySAMdc/azygous control (red)0.903331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.024250.155

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.669370.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.010841
Manapal/WT (break)1.016741
Manapal/WT (red)1.625540.222