Expression of 1-1-6.4.19.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7385 | 0.101 |
27DAP/17DAP | 1.3747 | 0.683 |
39DAP/27DAP | 0.97147 | 0.719 |
41DAP/39DAP | 0.95029 | 0.769 |
42DAP/41DAP | 1.23487 | 0.903 |
43DAP/42DAP | 0.95367 | 0.775 |
47DAP/43DAP | 1.12436 | 0.856 |
52DAP/47DAP | 2.91344 | 0.038 |
57DAP/52DAP | 0.71507 | 0.708 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00692 | 0.787 |
17DAP/reference | 0.81128 | 0.009 |
27DAP/reference | 0.96013 | 0.581 |
39DAP/reference | 0.82244 | 0.032 |
41DAP/reference | 0.83538 | 0.01 |
42DAP/reference | 1.31631 | 0.001 |
43DAP/reference | 0.86009 | 0.033 |
47DAP/reference | 1.07718 | 0.329 |
52DAP/reference | 1.39634 | 0.014 |
57DAP/reference | 1.12596 | 0.054 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.52175 | 0.581 |
27DAP/17DAP | 0.87477 | 0.446 |
39DAP/27DAP | 0.85658 | 0.482 |
41DAP/39DAP | 1.218 | 0.656 |
42DAP/41DAP | 0.83783 | 0.173 |
43DAP/42DAP | 0.94145 | 0.576 |
47DAP/43DAP | 0.88359 | 0.102 |
52DAP/47DAP | 2.04922 | 0.048 |
57DAP/52DAP | 3.32084 | 0.03 |
57DAP/7DAP | 1.9358 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17234 | 0.227 |
17DAP/reference | 1.09348 | 0.328 |
27DAP/reference | 0.92847 | 0.185 |
39DAP/reference | 1.81451 | 0.006 |
41DAP/reference | 1.09288 | 0.336 |
42DAP/reference | 1.35367 | 0.016 |
43DAP/reference | 1.44457 | 0.009 |
47DAP/reference | 1.15526 | 0.331 |
52DAP/reference | 1.29301 | 0.092 |
57DAP/reference | 1.36553 | 0.07 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94225 | 0.487 |
17DAP/reference | 0.92233 | 0.26 |
27DAP/reference | 1.2419 | 0.239 |
39DAP/reference | 1.16385 | 0.346 |
41DAP/reference | 1.37387 | 0.021 |
42DAP/reference | 1.14873 | 0.332 |
43DAP/reference | 1.10489 | 0.793 |
47DAP/reference | 1.18095 | 0.138 |
52DAP/reference | 0.93643 | 0.259 |
57DAP/reference | 1.19215 | 0.345 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99342 | 0.699 |
17DAP/reference | 0.9343 | 0.335 |
27DAP/reference | 1.02172 | 0.777 |
39DAP/reference | 1.24088 | 0.01 |
41DAP/reference | 1.09197 | 0.12 |
42DAP/reference | 1.09009 | 0.556 |
43DAP/reference | 1.13811 | 0.375 |
47DAP/reference | 1.14155 | 0.424 |
52DAP/reference | 1.62139 | 0.123 |
57DAP/reference | 2.94269 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05691 | 0.966 |
26DAP/20DAP | 1.0974 | 1 |
34DAP/26DAP | 0.92929 | 0.777 |
51DAP/34DAP | 0.96375 | 0.835 |
52DAP/51DAP | 1.11488 | 0.467 |
53DAP/52DAP | 0.94204 | 0.783 |
55DAP/53DAP | 0.78299 | 0.159 |
57DAP/55DAP | 0.93933 | 0.724 |
62DAP/57DAP | 1.32445 | 0.515 |
68DAP/62DAP | 1.70024 | 0.026 |
68DAP/14DAP | 1.69864 | 0.026 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.81235 | 0.186 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.70812 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.4043 | 0.025 |
Immature Eggplant/Mature Eggplant | 1.49452 | 0.055 |
Ripe Pepper/Ripe Tomato | 0.71598 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.80347 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.7287 | |
12-2/M82 | 1.78783 | |
12-4/M82 | 1.08557 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.86789 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96036 | |
3-2/M82 | 1.02565 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.33083 | |
5-3/M82 | 0.451 | 0.49 |
6-2/M82 | 0.88015 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.80548 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73552 | 0.243 |
IL2-6/WTpooled | 1.56469 | 0.419 |
IL7-5/WTpooled | 1.42346 | 0.792 |
IL7-3/WTpooled | 0.75527 | 0.418 |
IL12-4/WTpooled | 1.00158 | 1 |
IL1-4/WTpooled | 1.04654 | 1 |
WT/WTpooled | 0.94159 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.72359 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.17382 | 0.875 |
DC3000/delta hrp 6h | 1.5308 | 1 |
DC3000/delta hrp 12h | 0.92929 | 1 |
DC3000/delta hrp 24h | 1.09723 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.80504 | 0.253 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04518 | 1 |
Exp 36h | 0.85768 | 0.82 |
Exp 60h | 1.30701 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01876 | 1 |
Var 0h | 1.02498 | 1 |
Var 12h I row2-row1 | 1.17952 | 0.613 |
Var 12h NI row2-row1 | 0.9572 | 0.82 |
Var 36h I row2-row1 | 0.76126 | 1 |
Var 36h NI row2-row1 | 1.30023 | 1 |
Var 60h I row2-row1 | 0.82258 | 0.439 |
Var 60h NI row2-row1 | 1.0557 | 1 |
Time course 0hI-0hNI | 1.18466 | 0.413 |
Time course 12hI-12hNI | 0.97721 | 0.874 |
Time course 36hI-36hNI | 1.13159 | 0.166 |
Time course 60hI-60hNI | 0.98925 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.50573 | 0.232 |
transgenic ySAMdc/azygous control (breaker) | 0.47438 | 0.132 |
transgenic ySAMdc/azygous control (red) | 1.22102 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07875 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.36485 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.67412 | 0.172 |
Manapal/WT (break) | 0.90032 | 1 |
Manapal/WT (red) | 0.96531 | 0.863 |
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