Expression of 1-1-6.4.19.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.73850.101
27DAP/17DAP1.37470.683
39DAP/27DAP0.971470.719
41DAP/39DAP0.950290.769
42DAP/41DAP1.234870.903
43DAP/42DAP0.953670.775
47DAP/43DAP1.124360.856
52DAP/47DAP2.913440.038
57DAP/52DAP0.715070.708

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.006920.787
17DAP/reference0.811280.009
27DAP/reference0.960130.581
39DAP/reference0.822440.032
41DAP/reference0.835380.01
42DAP/reference1.316310.001
43DAP/reference0.860090.033
47DAP/reference1.077180.329
52DAP/reference1.396340.014
57DAP/reference1.125960.054

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.521750.581
27DAP/17DAP0.874770.446
39DAP/27DAP0.856580.482
41DAP/39DAP1.2180.656
42DAP/41DAP0.837830.173
43DAP/42DAP0.941450.576
47DAP/43DAP0.883590.102
52DAP/47DAP2.049220.048
57DAP/52DAP3.320840.03
57DAP/7DAP1.93580.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.172340.227
17DAP/reference1.093480.328
27DAP/reference0.928470.185
39DAP/reference1.814510.006
41DAP/reference1.092880.336
42DAP/reference1.353670.016
43DAP/reference1.444570.009
47DAP/reference1.155260.331
52DAP/reference1.293010.092
57DAP/reference1.365530.07

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.942250.487
17DAP/reference0.922330.26
27DAP/reference1.24190.239
39DAP/reference1.163850.346
41DAP/reference1.373870.021
42DAP/reference1.148730.332
43DAP/reference1.104890.793
47DAP/reference1.180950.138
52DAP/reference0.936430.259
57DAP/reference1.192150.345

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.993420.699
17DAP/reference0.93430.335
27DAP/reference1.021720.777
39DAP/reference1.240880.01
41DAP/reference1.091970.12
42DAP/reference1.090090.556
43DAP/reference1.138110.375
47DAP/reference1.141550.424
52DAP/reference1.621390.123
57DAP/reference2.942690.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.056910.966
26DAP/20DAP1.09741
34DAP/26DAP0.929290.777
51DAP/34DAP0.963750.835
52DAP/51DAP1.114880.467
53DAP/52DAP0.942040.783
55DAP/53DAP0.782990.159
57DAP/55DAP0.939330.724
62DAP/57DAP1.324450.515
68DAP/62DAP1.700240.026
68DAP/14DAP1.698640.026

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.812350.186

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.708120.058
Mature Green Tomato/Ripe Tomato0.40430.025
Immature Eggplant/Mature Eggplant1.494520.055
Ripe Pepper/Ripe Tomato0.715980.224
Mature Eggplant/Ripe Tomato0.803471

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.7287
12-2/M821.78783
12-4/M821.085571
1-3/M82N/AN/A
2-1-1/M820.86789
2-1/M82N/AN/A
2-6/M820.96036
3-2/M821.02565
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.33083
5-3/M820.4510.49
6-2/M820.88015
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.80548
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.735520.243
IL2-6/WTpooled1.564690.419
IL7-5/WTpooled1.423460.792
IL7-3/WTpooled0.755270.418
IL12-4/WTpooled1.001581
IL1-4/WTpooled1.046541
WT/WTpooled0.941591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.723590.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.173820.875
DC3000/delta hrp 6h1.53081
DC3000/delta hrp 12h0.929291
DC3000/delta hrp 24h1.097230.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.805040.253

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.045181
Exp 36h0.857680.82
Exp 60h1.307010.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018761
Var 0h1.024981
Var 12h I row2-row11.179520.613
Var 12h NI row2-row10.95720.82
Var 36h I row2-row10.761261
Var 36h NI row2-row11.300231
Var 60h I row2-row10.822580.439
Var 60h NI row2-row11.05571
Time course 0hI-0hNI1.184660.413
Time course 12hI-12hNI0.977210.874
Time course 36hI-36hNI1.131590.166
Time course 60hI-60hNI0.989251

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.505730.232
transgenic ySAMdc/azygous control (breaker)0.474380.132
transgenic ySAMdc/azygous control (red)1.221020.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.078750.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.364850.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.674120.172
Manapal/WT (break)0.900321
Manapal/WT (red)0.965310.863