Expression of 1-1-6.4.2.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26682 | 0.838 |
27DAP/17DAP | 0.99417 | 0.975 |
39DAP/27DAP | 1.19063 | 0.995 |
41DAP/39DAP | 0.89229 | 0.563 |
42DAP/41DAP | 0.91953 | 1 |
43DAP/42DAP | 1.02645 | 1 |
47DAP/43DAP | 1.37653 | 0.497 |
52DAP/47DAP | 1.14395 | 0.763 |
57DAP/52DAP | 1.20967 | 0.941 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92571 | 0.262 |
17DAP/reference | 0.96718 | 0.503 |
27DAP/reference | 1.02479 | 0.82 |
39DAP/reference | 0.95448 | 0.284 |
41DAP/reference | 0.96037 | 0.434 |
42DAP/reference | 0.98346 | 0.398 |
43DAP/reference | 1.18561 | 0.01 |
47DAP/reference | 1.21345 | 0.006 |
52DAP/reference | 1.14991 | 0.176 |
57DAP/reference | 1.1955 | 0.052 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.36342 | 0.051 |
27DAP/17DAP | 0.94557 | 0.169 |
39DAP/27DAP | 0.78005 | 0.036 |
41DAP/39DAP | 1.21981 | 0.817 |
42DAP/41DAP | 1.12491 | 0.401 |
43DAP/42DAP | 0.97431 | 0.558 |
47DAP/43DAP | 0.9525 | 0.687 |
52DAP/47DAP | 0.98052 | 0.917 |
57DAP/52DAP | 0.91285 | 0.48 |
57DAP/7DAP | 0.99096 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19993 | 0.305 |
17DAP/reference | 1.2457 | 0.023 |
27DAP/reference | 1.36097 | 0.246 |
39DAP/reference | 1.2189 | 0.086 |
41DAP/reference | 1.23448 | 0.042 |
42DAP/reference | 1.12614 | 0.308 |
43DAP/reference | 1.0102 | 0.802 |
47DAP/reference | 1.22578 | 0.161 |
52DAP/reference | 1.33603 | 0.012 |
57DAP/reference | 1.43022 | 0.027 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88369 | 0.19 |
17DAP/reference | 1.12352 | 0.294 |
27DAP/reference | 1.14167 | 0.086 |
39DAP/reference | 0.9621 | 0.37 |
41DAP/reference | 1.23457 | 0.05 |
42DAP/reference | 0.9945 | 0.594 |
43DAP/reference | 0.83068 | 0.114 |
47DAP/reference | 1.11649 | 0.098 |
52DAP/reference | 0.91384 | 0.101 |
57DAP/reference | 0.84977 | 0.092 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04288 | 1 |
17DAP/reference | 1.00029 | 0.839 |
27DAP/reference | 1.08808 | 0.207 |
39DAP/reference | 0.97024 | 0.544 |
41DAP/reference | 1.06224 | 0.939 |
42DAP/reference | 1.10462 | 0.49 |
43DAP/reference | 1.05088 | 0.815 |
47DAP/reference | 1.21769 | 0.127 |
52DAP/reference | 1.11534 | 0.674 |
57DAP/reference | 1.64408 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06431 | 0.966 |
26DAP/20DAP | 1.25338 | 0.39 |
34DAP/26DAP | 1.15023 | 1 |
51DAP/34DAP | 1.30972 | 0.042 |
52DAP/51DAP | 0.89511 | 1 |
53DAP/52DAP | 1.18979 | 0.428 |
55DAP/53DAP | 1.05791 | 0.876 |
57DAP/55DAP | 0.97205 | 0.845 |
62DAP/57DAP | 1.21964 | 0.569 |
68DAP/62DAP | 1.78259 | 0.097 |
68DAP/14DAP | 2.5184 | 0.027 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.59958 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7488 | 0.26 |
Mature Green Tomato/Ripe Tomato | 0.98499 | 0.774 |
Immature Eggplant/Mature Eggplant | 0.9193 | 0.292 |
Ripe Pepper/Ripe Tomato | 0.52919 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.15923 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.44588 | 0.742 |
1-1-2/M82 | 1.22568 | 1 |
12-2/M82 | 0.92889 | 0.692 |
12-4/M82 | 1.19157 | 1 |
1-3/M82 | 2.01656 | 0.479 |
2-1-1/M82 | 1.06011 | 1 |
2-1/M82 | 0.91072 | 0.345 |
2-6/M82 | 0.98789 | 1 |
3-2/M82 | 1.28696 | 0.549 |
4-1-1/M82 | 1.15332 | 1 |
4-1/M82 | 1.58539 | |
4-3-2/M82 | 1.33079 | 0.508 |
4-3/M82 | 1.21473 | 0.268 |
5-3/M82 | 0.7412 | 0.642 |
6-2/M82 | 1.54244 | 0.253 |
6-3/M82 | 1.05195 | 1 |
7-1/M82 | 1.29767 | 0.741 |
7-2/M82 | 1.05431 | 1 |
9-3-2/M82 | 1.26557 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75548 | 0.247 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.5507 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.71756 | 0.581 |
IL1-4/WTpooled | 0.8421 | 0.562 |
WT/WTpooled | 0.42257 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01524 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03761 | 0.921 |
DC3000/delta hrp 6h | 1.09492 | 1 |
DC3000/delta hrp 12h | 0.97414 | 1 |
DC3000/delta hrp 24h | 1.07305 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.67246 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.0782 | 0.479 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05848 | 1 |
Exp 36h | 1.20567 | 0.693 |
Exp 60h | 1.14823 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98014 | 1 |
Var 0h | 0.46124 | 0.933 |
Var 12h I row2-row1 | 0.93916 | 0.856 |
Var 12h NI row2-row1 | 0.96629 | 0.82 |
Var 36h I row2-row1 | 1.44772 | 0.742 |
Var 36h NI row2-row1 | 1.11467 | 1 |
Var 60h I row2-row1 | 0.87578 | 0.832 |
Var 60h NI row2-row1 | 0.8607 | 0.38 |
Time course 0hI-0hNI | 1.02068 | 0.852 |
Time course 12hI-12hNI | 0.99563 | 1 |
Time course 36hI-36hNI | 1.00462 | 0.908 |
Time course 60hI-60hNI | 1.08332 | 0.254 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.82904 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.75226 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.98168 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01175 | 0.909 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.74767 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86963 | 1 |
Manapal/WT (break) | 0.923 | 1 |
Manapal/WT (red) | 1.03412 | 1 |
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