Expression of 1-1-6.4.2.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.266820.838
27DAP/17DAP0.994170.975
39DAP/27DAP1.190630.995
41DAP/39DAP0.892290.563
42DAP/41DAP0.919531
43DAP/42DAP1.026451
47DAP/43DAP1.376530.497
52DAP/47DAP1.143950.763
57DAP/52DAP1.209670.941

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.925710.262
17DAP/reference0.967180.503
27DAP/reference1.024790.82
39DAP/reference0.954480.284
41DAP/reference0.960370.434
42DAP/reference0.983460.398
43DAP/reference1.185610.01
47DAP/reference1.213450.006
52DAP/reference1.149910.176
57DAP/reference1.19550.052

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.363420.051
27DAP/17DAP0.945570.169
39DAP/27DAP0.780050.036
41DAP/39DAP1.219810.817
42DAP/41DAP1.124910.401
43DAP/42DAP0.974310.558
47DAP/43DAP0.95250.687
52DAP/47DAP0.980520.917
57DAP/52DAP0.912850.48
57DAP/7DAP0.990961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.199930.305
17DAP/reference1.24570.023
27DAP/reference1.360970.246
39DAP/reference1.21890.086
41DAP/reference1.234480.042
42DAP/reference1.126140.308
43DAP/reference1.01020.802
47DAP/reference1.225780.161
52DAP/reference1.336030.012
57DAP/reference1.430220.027

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.883690.19
17DAP/reference1.123520.294
27DAP/reference1.141670.086
39DAP/reference0.96210.37
41DAP/reference1.234570.05
42DAP/reference0.99450.594
43DAP/reference0.830680.114
47DAP/reference1.116490.098
52DAP/reference0.913840.101
57DAP/reference0.849770.092

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042881
17DAP/reference1.000290.839
27DAP/reference1.088080.207
39DAP/reference0.970240.544
41DAP/reference1.062240.939
42DAP/reference1.104620.49
43DAP/reference1.050880.815
47DAP/reference1.217690.127
52DAP/reference1.115340.674
57DAP/reference1.644080.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.064310.966
26DAP/20DAP1.253380.39
34DAP/26DAP1.150231
51DAP/34DAP1.309720.042
52DAP/51DAP0.895111
53DAP/52DAP1.189790.428
55DAP/53DAP1.057910.876
57DAP/55DAP0.972050.845
62DAP/57DAP1.219640.569
68DAP/62DAP1.782590.097
68DAP/14DAP2.51840.027

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.599580.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.74880.26
Mature Green Tomato/Ripe Tomato0.984990.774
Immature Eggplant/Mature Eggplant0.91930.292
Ripe Pepper/Ripe Tomato0.529190.293
Mature Eggplant/Ripe Tomato1.159231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.445880.742
1-1-2/M821.225681
12-2/M820.928890.692
12-4/M821.191571
1-3/M822.016560.479
2-1-1/M821.060111
2-1/M820.910720.345
2-6/M820.987891
3-2/M821.286960.549
4-1-1/M821.153321
4-1/M821.58539
4-3-2/M821.330790.508
4-3/M821.214730.268
5-3/M820.74120.642
6-2/M821.542440.253
6-3/M821.051951
7-1/M821.297670.741
7-2/M821.054311
9-3-2/M821.265571

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.755480.247
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.5507
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.717560.581
IL1-4/WTpooled0.84210.562
WT/WTpooled0.42257

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.015241

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037610.921
DC3000/delta hrp 6h1.094921
DC3000/delta hrp 12h0.974141
DC3000/delta hrp 24h1.073050.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.672460.27
DC3000 delta B/DC3000 delta AB1.07820.479

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.058481
Exp 36h1.205670.693
Exp 60h1.148230.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980141
Var 0h0.461240.933
Var 12h I row2-row10.939160.856
Var 12h NI row2-row10.966290.82
Var 36h I row2-row11.447720.742
Var 36h NI row2-row11.114671
Var 60h I row2-row10.875780.832
Var 60h NI row2-row10.86070.38
Time course 0hI-0hNI1.020680.852
Time course 12hI-12hNI0.995631
Time course 36hI-36hNI1.004620.908
Time course 60hI-60hNI1.083320.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.829040.246
transgenic ySAMdc/azygous control (breaker)0.752260.173
transgenic ySAMdc/azygous control (red)0.981681

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.011750.909

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.747670.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.869631
Manapal/WT (break)0.9231
Manapal/WT (red)1.034121