Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.4.2.6

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.79859	0.456
27DAP/17DAP	0.99531	1
39DAP/27DAP	0.87087	0.62
41DAP/39DAP	0.81936	0.53
42DAP/41DAP	1.28766	0.832
43DAP/42DAP	1.08029	0.993
47DAP/43DAP	1.44937	0.442
52DAP/47DAP	1.11527	0.794
57DAP/52DAP	1.19151	0.941

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.22585	0.662
17DAP/reference	1.09335	0.132
27DAP/reference	0.9651	0.525
39DAP/reference	0.97804	0.704
41DAP/reference	1.07549	0.043
42DAP/reference	0.89829	0.029
43DAP/reference	1.06966	0.118
47DAP/reference	0.93401	0.098
52DAP/reference	0.98473	0.515
57DAP/reference	0.84674	0.028

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	N/A	N/A
27DAP/17DAP	0.94103
39DAP/27DAP	N/A	N/A
41DAP/39DAP	1.12374
42DAP/41DAP	1.53277	0.55
43DAP/42DAP	1.15398	0.585
47DAP/43DAP	1.74466	0.758
52DAP/47DAP	0.39309	0.082
57DAP/52DAP	1.83221	0.411
57DAP/7DAP	1.34345	0.249

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.19017	0.409
17DAP/reference	1.03983	1
27DAP/reference	1.14283	0.664
39DAP/reference	1.39495	0.027
41DAP/reference	0.8373	0.116
42DAP/reference	1.17353	0.534
43DAP/reference	1.13813	0.325
47DAP/reference	0.86308	0.044
52DAP/reference	1.22166	0.171
57DAP/reference	1.02563	0.799

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06626	0.612
17DAP/reference	0.9564	0.434
27DAP/reference	1.01523	1
39DAP/reference	0.89255	0.113
41DAP/reference	0.9112	0.105
42DAP/reference	0.80896	0.073
43DAP/reference	1.0958	0.417
47DAP/reference	0.87779	0.137
52DAP/reference	1.08262	0.24
57DAP/reference	1.11637	0.229

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.20141	0.142
17DAP/reference	1.07246	0.814
27DAP/reference	1.18026	0.425
39DAP/reference	1.1425	0.377
41DAP/reference	0.92136	0.264
42DAP/reference	0.75082	0.087
43DAP/reference	0.8009	0.081
47DAP/reference	0.90048	0.168
52DAP/reference	0.82396	0.166
57DAP/reference	0.87285	0.165

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.08189	0.966
26DAP/20DAP	0.8118
34DAP/26DAP	1.34397	1
51DAP/34DAP	0.79727	0.698
52DAP/51DAP	1.50587
53DAP/52DAP	0.9505	0.803
55DAP/53DAP	0.98813	0.876
57DAP/55DAP	0.96576	0.899
62DAP/57DAP	0.99486	1
68DAP/62DAP	0.91549	0.747
68DAP/14DAP	0.77824	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.43989

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.89265	0.446
Immature Eggplant/Mature Eggplant	1.00124	1
Ripe Pepper/Ripe Tomato	0.55969	0.293
Mature Eggplant/Ripe Tomato	0.84701	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.07157	1
1-1-2/M82	1.02684	1
12-2/M82	0.8472
12-4/M82	1.01953	1
1-3/M82	0.91247
2-1-1/M82	1.18673	0.457
2-1/M82	1.23429	1
2-6/M82	1.01404
3-2/M82	1.18165	0.426
4-1-1/M82	1.19068	1
4-1/M82	N/A	N/A
4-3-2/M82	1.17252	0.508
4-3/M82	1.38233	1
5-3/M82	0.87794	0.49
6-2/M82	0.88285	0.497
6-3/M82	0.94307
7-1/M82	1.0523	1
7-2/M82	0.87097	0.527
9-3-2/M82	0.90943

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.03632	1
IL2-6/WTpooled	1.04967	0.584
IL7-5/WTpooled	1.16069	1
IL7-3/WTpooled	1.29023	1
IL12-4/WTpooled	1.09759	0.785
IL1-4/WTpooled	1.05895	1
WT/WTpooled	0.99662	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.97029	1
DC3000/delta hrp 6h	1.03033	1
DC3000/delta hrp 12h	0.97434	1
DC3000/delta hrp 24h	0.61569	0.037

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.04382	1
Exp 36h	0.84552	0.471
Exp 60h	1.03153	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	0.96481	0.362
transgenic ySAMdc/azygous control (breaker)	0.95717	0.49
transgenic ySAMdc/azygous control (red)	1.00587	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.95884	0.191

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.21274	0.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.43935	0.084
Manapal/WT (break)	1.14939	0.183
Manapal/WT (red)	1.08823	1