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Expression of 1-1-6.4.20.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.021091
27DAP/17DAP1.022391
39DAP/27DAP1.043790.876
41DAP/39DAP1.174940.56
42DAP/41DAP1.176060.802
43DAP/42DAP0.860240.77
47DAP/43DAP1.134510.943
52DAP/47DAP0.854570.595
57DAP/52DAP0.959160.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.872290.042
17DAP/reference0.936280.321
27DAP/reference0.911790.141
39DAP/reference0.944080.455
41DAP/reference0.942440.542
42DAP/reference0.879620.069
43DAP/reference0.899950.377
47DAP/reference1.111350.666
52DAP/reference0.692560.028
57DAP/reference0.902730.248

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.089820.525
27DAP/17DAP0.981360.919
39DAP/27DAP1.389270.227
41DAP/39DAP0.783160.121
42DAP/41DAP1.066180.687
43DAP/42DAP1.361450.027
47DAP/43DAP1.130170.376
52DAP/47DAP0.937640.6
57DAP/52DAP0.911990.511
57DAP/7DAP1.04071

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.011640.682
17DAP/reference1.028830.971
27DAP/reference1.046460.804
39DAP/reference0.854590.126
41DAP/reference0.973670.489
42DAP/reference0.824530.011
43DAP/reference0.968560.459
47DAP/reference0.907830.383
52DAP/reference0.996290.621
57DAP/reference1.250580.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.7860.093
17DAP/reference0.644830.005
27DAP/reference0.723380.053
39DAP/reference0.741230.04
41DAP/reference0.757890.042
42DAP/reference0.692830.02
43DAP/reference0.980690.646
47DAP/reference0.839630.015
52DAP/reference0.578340.004
57DAP/reference0.513340.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02760.903
17DAP/reference1.066320.738
27DAP/reference0.956380.357
39DAP/reference0.848090.046
41DAP/reference1.00250.826
42DAP/reference1.073840.54
43DAP/reference1.252930.046
47DAP/reference0.77010.125
52DAP/reference1.008320.781
57DAP/reference0.893430.326

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.200430.916
26DAP/20DAP0.93991
34DAP/26DAP0.798130.44
51DAP/34DAP8.694210.031
52DAP/51DAP0.384950.07
53DAP/52DAP4.107610.022
55DAP/53DAP0.845320.144
57DAP/55DAP0.924910.633
62DAP/57DAP0.348060.002
68DAP/62DAP1.522520.278
68DAP/14DAP3.931310.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.47530.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.045180.036
Mature Green Tomato/Ripe Tomato1.227390.437
Immature Eggplant/Mature Eggplant0.928930.808
Ripe Pepper/Ripe Tomato13.70690.258
Mature Eggplant/Ripe Tomato0.76751

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.093731
1-1-2/M821.056881
12-2/M821.126941
12-4/M821.121871
1-3/M821.023171
2-1-1/M821.033941
2-1/M821.126430.328
2-6/M820.950521
3-2/M821.012791
4-1-1/M821.011821
4-1/M821.192631
4-3-2/M821.038091
4-3/M821.116481
5-3/M820.948550.49
6-2/M821.031491
6-3/M821.026761
7-1/M820.91850.443
7-2/M821.078831
9-3-2/M821.450871

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.767640.243
IL2-6/WTpooled0.934511
IL7-5/WTpooled1.235980.75
IL7-3/WTpooled0.816060.418
IL12-4/WTpooled0.941240.71
IL1-4/WTpooled0.942670.834
WT/WTpooled0.983961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.685850.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.008031
DC3000/delta hrp 6h1.207581
DC3000/delta hrp 12h1.144111
DC3000/delta hrp 24h1.035310.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB9.7491N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.987421
Exp 36h0.658260.406
Exp 60h0.547080.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996411
Var 0hN/AN/A
Var 12h I row2-row11.21244N/A
Var 12h NI row2-row10.392581
Var 36h I row2-row11.052431
Var 36h NI row2-row11.90313N/A
Var 60h I row2-row10.869990.285
Var 60h NI row2-row11.626661
Time course 0hI-0hNI0.866770.138
Time course 12hI-12hNI0.955570.808
Time course 36hI-36hNI0.807990.034
Time course 60hI-60hNI1.29770.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.051290.699
transgenic ySAMdc/azygous control (breaker)1.21321
transgenic ySAMdc/azygous control (red)1.17130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.862780.186

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.277850.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.221250.09
Manapal/WT (break)0.91011
Manapal/WT (red)N/AN/A