Expression of 1-1-6.4.20.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.067071
27DAP/17DAP1.349060.721
39DAP/27DAP0.865890.507
41DAP/39DAP1.273990.344
42DAP/41DAP0.929131
43DAP/42DAP1.033651
47DAP/43DAP1.204360.349
52DAP/47DAP0.759220.42
57DAP/52DAP1.040911

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.45580.522
17DAP/reference0.93340.448
27DAP/reference0.998190.885
39DAP/reference0.931010.333
41DAP/reference0.99831
42DAP/reference1.487520.018
43DAP/reference1.221690.142
47DAP/reference1.227690.03
52DAP/reference1.422840.023
57DAP/reference1.512490.059

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.98110.732
27DAP/17DAP1.014171
39DAP/27DAP0.968660.775
41DAP/39DAP1.048090.849
42DAP/41DAP1.021960.892
43DAP/42DAP0.952030.482
47DAP/43DAP1.057390.857
52DAP/47DAP1.800130.112
57DAP/52DAP2.586820.036
57DAP/7DAP2.215921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.206090.085
17DAP/reference1.229930.112
27DAP/reference1.416210.008
39DAP/reference1.0171
41DAP/referenceN/AN/A
42DAP/reference1.084310.059
43DAP/reference0.948430.126
47DAP/reference1.29504
52DAP/reference1.080240.636
57DAP/reference1.850270.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.130180.355
17DAP/reference0.94150.487
27DAP/reference1.143790.192
39DAP/reference1.335550.051
41DAP/reference1.360080.036
42DAP/reference1.150760.302
43DAP/reference0.900850.162
47DAP/reference1.036620.816
52DAP/reference1.51680.007
57DAP/reference1.275870.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.094930.397
17DAP/reference1.285650.046
27DAP/reference1.662120.013
39DAP/reference1.339050.175
41DAP/reference1.458010.065
42DAP/reference2.230460.068
43DAP/reference1.551040.034
47DAP/reference1.242340.339
52DAP/reference1.141850.549
57DAP/reference1.86290.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.084810.966
26DAP/20DAP4.086710.718
34DAP/26DAP0.846490.771
51DAP/34DAP0.99895
52DAP/51DAP1.050510.873
53DAP/52DAP1.12658
55DAP/53DAP1.005390.964
57DAP/55DAP0.20491
62DAP/57DAP1.078331
68DAP/62DAP1.356260.737
68DAP/14DAP1.760490.189

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.42170.026

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.946750.522
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.80246

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.646011
12-2/M822.95766
12-4/M820.586970.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.66177
3-2/M820.680251
4-1-1/M82N/AN/A
4-1/M820.946881
4-3-2/M820.759590.487
4-3/M82N/AN/A
5-3/M820.507180.419
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.882641
7-2/M82N/AN/A
9-3-2/M820.796840.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.30133
IL2-6/WTpooled1.226690.584
IL7-5/WTpooled0.727930.483
IL7-3/WTpooled0.966361
IL12-4/WTpooled1.1410.595
IL1-4/WTpooled0.962080.699
WT/WTpooled0.900961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.207540.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.040330.921
DC3000/delta hrp 6h1.2318
DC3000/delta hrp 12h1.83396
DC3000/delta hrp 24h0.874420.231

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.6782
DC3000 delta B/DC3000 delta AB1.2228

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.057281
Exp 36h0.942430.943
Exp 60h0.977530.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.036241
Var 0hN/AN/A
Var 12h I row2-row11.099410.692
Var 12h NI row2-row11.087481
Var 36h I row2-row11.080711
Var 36h NI row2-row11.917630.482
Var 60h I row2-row10.539250.285
Var 60h NI row2-row11.188561
Time course 0hI-0hNI0.834750.294
Time course 12hI-12hNI1.089531
Time course 36hI-36hNI1.075270.533
Time course 60hI-60hNI3.460360.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.961510.722
transgenic ySAMdc/azygous control (breaker)0.359970.15
transgenic ySAMdc/azygous control (red)1.5741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.438320.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.656230.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.212261
Manapal/WT (break)2.004180.183
Manapal/WT (red)1.503370.142