Expression of 1-1-6.4.20.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89255 | 0.413 |
27DAP/17DAP | 1.2263 | 0.845 |
39DAP/27DAP | 1.09901 | 0.992 |
41DAP/39DAP | 0.83837 | 0.358 |
42DAP/41DAP | 1.06456 | 0.941 |
43DAP/42DAP | 0.93893 | 0.813 |
47DAP/43DAP | 1.42977 | 0.201 |
52DAP/47DAP | 0.91155 | 0.705 |
57DAP/52DAP | 1.18418 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98465 | 0.589 |
17DAP/reference | 1.05233 | 0.457 |
27DAP/reference | 1.05195 | 0.357 |
39DAP/reference | 0.92197 | 0.093 |
41DAP/reference | 0.89553 | 0.085 |
42DAP/reference | 0.93125 | 0.04 |
43DAP/reference | 0.98653 | 0.691 |
47DAP/reference | 0.93113 | 0.071 |
52DAP/reference | 0.97376 | 0.489 |
57DAP/reference | 1.0118 | 0.927 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07884 | 1 |
27DAP/17DAP | 1.10176 | 0.836 |
39DAP/27DAP | 1.10452 | 0.799 |
41DAP/39DAP | 0.99603 | 1 |
42DAP/41DAP | 0.94581 | 0.589 |
43DAP/42DAP | 1.07639 | 0.585 |
47DAP/43DAP | 1.05035 | 0.833 |
52DAP/47DAP | 0.9795 | 0.925 |
57DAP/52DAP | 1.36153 | 0.129 |
57DAP/7DAP | 1.71802 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.4196 | 0.083 |
17DAP/reference | 0.90925 | 0.22 |
27DAP/reference | 0.86478 | 0.101 |
39DAP/reference | 0.84172 | 0.109 |
41DAP/reference | 0.87467 | 0.139 |
42DAP/reference | 0.95431 | 0.415 |
43DAP/reference | 0.92118 | 0.292 |
47DAP/reference | 0.93635 | 0.383 |
52DAP/reference | 1.01964 | 1 |
57DAP/reference | 1.06988 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02398 | 0.756 |
17DAP/reference | 0.83389 | 0.023 |
27DAP/reference | 0.86397 | 0.108 |
39DAP/reference | 0.94788 | 0.265 |
41DAP/reference | 0.83417 | 0.028 |
42DAP/reference | 0.8399 | 0.028 |
43DAP/reference | 0.90116 | 0.229 |
47DAP/reference | 0.99489 | 0.678 |
52DAP/reference | 0.82776 | 0.014 |
57DAP/reference | 0.91693 | 0.116 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18375 | 0.078 |
17DAP/reference | 1.01028 | 0.81 |
27DAP/reference | 0.95917 | 0.416 |
39DAP/reference | 0.98303 | 0.643 |
41DAP/reference | 0.86704 | 0.107 |
42DAP/reference | 0.90103 | 0.22 |
43DAP/reference | 0.86364 | 0.056 |
47DAP/reference | 0.88246 | 0.027 |
52DAP/reference | 1.85582 | 0.094 |
57DAP/reference | 0.91913 | 0.199 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02607 | 0.966 |
26DAP/20DAP | 1.72042 | 0.099 |
34DAP/26DAP | 0.81185 | 0.159 |
51DAP/34DAP | 0.99856 | 0.844 |
52DAP/51DAP | 0.95243 | 1 |
53DAP/52DAP | 0.97911 | 0.876 |
55DAP/53DAP | 0.88106 | 0.102 |
57DAP/55DAP | 1.16639 | 0.044 |
62DAP/57DAP | 0.98084 | 0.994 |
68DAP/62DAP | 0.92276 | 0.609 |
68DAP/14DAP | 1.09182 | 0.85 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.68135 | 0.022 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8892 | 0.436 |
Mature Green Tomato/Ripe Tomato | 0.56495 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.8758 | 0.197 |
Ripe Pepper/Ripe Tomato | 1.61249 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.80178 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10947 | 1 |
1-1-2/M82 | 1.0745 | 1 |
12-2/M82 | 0.92377 | |
12-4/M82 | 0.8628 | 1 |
1-3/M82 | 1.84163 | |
2-1-1/M82 | 1.07018 | 1 |
2-1/M82 | 0.99032 | 1 |
2-6/M82 | 0.98794 | 1 |
3-2/M82 | 0.98482 | |
4-1-1/M82 | 1.14262 | |
4-1/M82 | 0.79042 | |
4-3-2/M82 | 1.06066 | |
4-3/M82 | 0.97291 | 1 |
5-3/M82 | 1.20406 | 1 |
6-2/M82 | 0.83055 | |
6-3/M82 | 0.65404 | 1 |
7-1/M82 | 0.90597 | 0.398 |
7-2/M82 | 0.8263 | |
9-3-2/M82 | 1.48766 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75503 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09308 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82276 | 1 |
DC3000/delta hrp 6h | 1.3486 | 1 |
DC3000/delta hrp 12h | 1.18081 | 1 |
DC3000/delta hrp 24h | 1.08791 | 0.582 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.50449 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.11721 | 0.477 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.82437 | 1 |
Exp 36h | 1.10824 | 1 |
Exp 60h | 1.10727 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03279 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.97771 | 0.948 |
Var 12h NI row2-row1 | 1.36508 | 0.266 |
Var 36h I row2-row1 | 1.00153 | 1 |
Var 36h NI row2-row1 | 0.70187 | 0.421 |
Var 60h I row2-row1 | 1.02056 | 0.347 |
Var 60h NI row2-row1 | 0.73441 | 0.431 |
Time course 0hI-0hNI | 0.86428 | 0.15 |
Time course 12hI-12hNI | 0.99526 | 1 |
Time course 36hI-36hNI | 1.27396 | 0.101 |
Time course 60hI-60hNI | 1.60018 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99952 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.2413 | 1 |
transgenic ySAMdc/azygous control (red) | 1.07653 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.21831 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73184 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.13221 | 0.307 |
Manapal/WT (break) | 1.08218 | 0.381 |
Manapal/WT (red) | 1.19566 | 0.413 |
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