Expression of 1-1-6.4.20.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.892550.413
27DAP/17DAP1.22630.845
39DAP/27DAP1.099010.992
41DAP/39DAP0.838370.358
42DAP/41DAP1.064560.941
43DAP/42DAP0.938930.813
47DAP/43DAP1.429770.201
52DAP/47DAP0.911550.705
57DAP/52DAP1.184180.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.984650.589
17DAP/reference1.052330.457
27DAP/reference1.051950.357
39DAP/reference0.921970.093
41DAP/reference0.895530.085
42DAP/reference0.931250.04
43DAP/reference0.986530.691
47DAP/reference0.931130.071
52DAP/reference0.973760.489
57DAP/reference1.01180.927

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.078841
27DAP/17DAP1.101760.836
39DAP/27DAP1.104520.799
41DAP/39DAP0.996031
42DAP/41DAP0.945810.589
43DAP/42DAP1.076390.585
47DAP/43DAP1.050350.833
52DAP/47DAP0.97950.925
57DAP/52DAP1.361530.129
57DAP/7DAP1.718021

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.41960.083
17DAP/reference0.909250.22
27DAP/reference0.864780.101
39DAP/reference0.841720.109
41DAP/reference0.874670.139
42DAP/reference0.954310.415
43DAP/reference0.921180.292
47DAP/reference0.936350.383
52DAP/reference1.019641
57DAP/reference1.069880.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.023980.756
17DAP/reference0.833890.023
27DAP/reference0.863970.108
39DAP/reference0.947880.265
41DAP/reference0.834170.028
42DAP/reference0.83990.028
43DAP/reference0.901160.229
47DAP/reference0.994890.678
52DAP/reference0.827760.014
57DAP/reference0.916930.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.183750.078
17DAP/reference1.010280.81
27DAP/reference0.959170.416
39DAP/reference0.983030.643
41DAP/reference0.867040.107
42DAP/reference0.901030.22
43DAP/reference0.863640.056
47DAP/reference0.882460.027
52DAP/reference1.855820.094
57DAP/reference0.919130.199

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.026070.966
26DAP/20DAP1.720420.099
34DAP/26DAP0.811850.159
51DAP/34DAP0.998560.844
52DAP/51DAP0.952431
53DAP/52DAP0.979110.876
55DAP/53DAP0.881060.102
57DAP/55DAP1.166390.044
62DAP/57DAP0.980840.994
68DAP/62DAP0.922760.609
68DAP/14DAP1.091820.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.681350.022

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.88920.436
Mature Green Tomato/Ripe Tomato0.564950.017
Immature Eggplant/Mature Eggplant0.87580.197
Ripe Pepper/Ripe Tomato1.612490.256
Mature Eggplant/Ripe Tomato1.801780.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.109471
1-1-2/M821.07451
12-2/M820.92377
12-4/M820.86281
1-3/M821.84163
2-1-1/M821.070181
2-1/M820.990321
2-6/M820.987941
3-2/M820.98482
4-1-1/M821.14262
4-1/M820.79042
4-3-2/M821.06066
4-3/M820.972911
5-3/M821.204061
6-2/M820.83055
6-3/M820.654041
7-1/M820.905970.398
7-2/M820.8263
9-3-2/M821.48766

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.75503
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.093080.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.822761
DC3000/delta hrp 6h1.34861
DC3000/delta hrp 12h1.180811
DC3000/delta hrp 24h1.087910.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.504490.042
DC3000 delta B/DC3000 delta AB1.117210.477

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.824371
Exp 36h1.108241
Exp 60h1.107271

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.032791
Var 0hN/AN/A
Var 12h I row2-row10.977710.948
Var 12h NI row2-row11.365080.266
Var 36h I row2-row11.001531
Var 36h NI row2-row10.701870.421
Var 60h I row2-row11.020560.347
Var 60h NI row2-row10.734410.431
Time course 0hI-0hNI0.864280.15
Time course 12hI-12hNI0.995261
Time course 36hI-36hNI1.273960.101
Time course 60hI-60hNI1.600180.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.999521
transgenic ySAMdc/azygous control (breaker)1.24131
transgenic ySAMdc/azygous control (red)1.076530.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.218310.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.731840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.132210.307
Manapal/WT (break)1.082180.381
Manapal/WT (red)1.195660.413