Expression of 1-1-6.4.20.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09012 | 0.838 |
27DAP/17DAP | 1.43402 | 0.742 |
39DAP/27DAP | 0.95923 | 0.67 |
41DAP/39DAP | 0.78844 | 0.394 |
42DAP/41DAP | 0.79385 | 0.774 |
43DAP/42DAP | 0.97722 | 0.925 |
47DAP/43DAP | 1.37744 | 0.702 |
52DAP/47DAP | 1.08757 | 0.886 |
57DAP/52DAP | 1.13692 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02631 | 0.814 |
17DAP/reference | 1.07593 | 0.143 |
27DAP/reference | 0.94471 | 0.304 |
39DAP/reference | 0.94799 | 0.315 |
41DAP/reference | 0.99112 | 0.814 |
42DAP/reference | 1.00629 | 1 |
43DAP/reference | 0.99995 | 0.942 |
47DAP/reference | 1.01175 | 0.91 |
52DAP/reference | 0.97322 | 0.475 |
57DAP/reference | 0.95494 | 0.156 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.54713 | 0.117 |
27DAP/17DAP | 0.98072 | 0.919 |
39DAP/27DAP | 1.20106 | 1 |
41DAP/39DAP | 1.03786 | 0.997 |
42DAP/41DAP | 1.08558 | 0.8 |
43DAP/42DAP | 0.79574 | 0.321 |
47DAP/43DAP | 1.08381 | 0.998 |
52DAP/47DAP | 1.33453 | 0.402 |
57DAP/52DAP | 1.57626 | 0.158 |
57DAP/7DAP | 1.09668 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3552 | 0.053 |
17DAP/reference | 1.63961 | 0.007 |
27DAP/reference | 1.73903 | 0.007 |
39DAP/reference | 1.66066 | 0.008 |
41DAP/reference | 1.66757 | 0.024 |
42DAP/reference | 1.70669 | 0.006 |
43DAP/reference | 2.09532 | 0.007 |
47DAP/reference | 1.24048 | 0.13 |
52DAP/reference | 1.58489 | 0.007 |
57DAP/reference | 1.56011 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9689 | 0.58 |
17DAP/reference | 0.93261 | 0.245 |
27DAP/reference | 0.94707 | 0.366 |
39DAP/reference | 0.93307 | 0.113 |
41DAP/reference | 0.97795 | 0.364 |
42DAP/reference | 0.96612 | 0.289 |
43DAP/reference | 0.80183 | 0.075 |
47DAP/reference | 1.03176 | 0.572 |
52DAP/reference | 0.94115 | 0.078 |
57DAP/reference | 1.02452 | 0.957 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30371 | 0.034 |
17DAP/reference | 1.05633 | 0.833 |
27DAP/reference | 1.49756 | 0.03 |
39DAP/reference | 1.37803 | 0.012 |
41DAP/reference | 1.17371 | 0.12 |
42DAP/reference | 1.32621 | 0.07 |
43DAP/reference | 1.25523 | 0.219 |
47DAP/reference | 0.97692 | 0.509 |
52DAP/reference | 2.22521 | 0.058 |
57DAP/reference | 1.18973 | 0.452 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.44118 | 0.966 |
26DAP/20DAP | 1.20621 | 0.342 |
34DAP/26DAP | 1.0423 | 1 |
51DAP/34DAP | 1.84564 | 0.081 |
52DAP/51DAP | 1.06366 | 1 |
53DAP/52DAP | 1.25576 | 0.662 |
55DAP/53DAP | 0.88596 | 0.363 |
57DAP/55DAP | 1.00047 | 0.93 |
62DAP/57DAP | 1.08987 | 0.833 |
68DAP/62DAP | 1.27434 | 0.864 |
68DAP/14DAP | 1.32274 | 0.049 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89037 | 0.399 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.90744 | 0.539 |
Mature Green Tomato/Ripe Tomato | 4.14488 | 0.016 |
Immature Eggplant/Mature Eggplant | 0.8687 | 0.197 |
Ripe Pepper/Ripe Tomato | 1.19909 | 1 |
Mature Eggplant/Ripe Tomato | 1.9376 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99681 | 1 |
1-1-2/M82 | 1.09264 | 1 |
12-2/M82 | 1.02202 | 1 |
12-4/M82 | 0.98977 | 0.619 |
1-3/M82 | 0.99709 | 1 |
2-1-1/M82 | 1.06294 | 0.764 |
2-1/M82 | 1.22392 | |
2-6/M82 | 0.98002 | 1 |
3-2/M82 | 1.0089 | |
4-1-1/M82 | 0.93227 | 1 |
4-1/M82 | 1.01886 | |
4-3-2/M82 | 0.83169 | |
4-3/M82 | 1.00419 | 0.268 |
5-3/M82 | 1.10059 | 0.572 |
6-2/M82 | 1.01295 | 1 |
6-3/M82 | 1.02189 | 1 |
7-1/M82 | 0.95449 | |
7-2/M82 | 1.1118 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73268 | |
IL2-6/WTpooled | 1.44436 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.94801 | 1 |
IL12-4/WTpooled | 1.12009 | |
IL1-4/WTpooled | 0.81573 | 0.834 |
WT/WTpooled | 1.062 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11954 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00079 | 1 |
DC3000/delta hrp 6h | 1.07231 | 1 |
DC3000/delta hrp 12h | 1.067 | 1 |
DC3000/delta hrp 24h | 1.03868 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.59715 | |
DC3000 delta B/DC3000 delta AB | 0.71187 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.06306 | 1 |
Exp 36h | 1.11675 | 1 |
Exp 60h | 1.05826 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04182 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 0.93502 | 0.565 |
Var 12h NI row2-row1 | 1.22505 | 0.235 |
Var 36h I row2-row1 | 1.22279 | 0.309 |
Var 36h NI row2-row1 | 1.36375 | 1 |
Var 60h I row2-row1 | 0.92865 | 0.582 |
Var 60h NI row2-row1 | 1.15129 | 1 |
Time course 0hI-0hNI | 0.87202 | 0.196 |
Time course 12hI-12hNI | 1.41921 | 0.013 |
Time course 36hI-36hNI | 1.30362 | 0.023 |
Time course 60hI-60hNI | 1.6062 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91921 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.85939 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.05268 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02285 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8575 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08244 | 1 |
Manapal/WT (break) | 0.98241 | 1 |
Manapal/WT (red) | 0.96901 | 0.863 |
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