Expression of 1-1-6.4.20.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.090120.838
27DAP/17DAP1.434020.742
39DAP/27DAP0.959230.67
41DAP/39DAP0.788440.394
42DAP/41DAP0.793850.774
43DAP/42DAP0.977220.925
47DAP/43DAP1.377440.702
52DAP/47DAP1.087570.886
57DAP/52DAP1.136920.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.026310.814
17DAP/reference1.075930.143
27DAP/reference0.944710.304
39DAP/reference0.947990.315
41DAP/reference0.991120.814
42DAP/reference1.006291
43DAP/reference0.999950.942
47DAP/reference1.011750.91
52DAP/reference0.973220.475
57DAP/reference0.954940.156

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.547130.117
27DAP/17DAP0.980720.919
39DAP/27DAP1.201061
41DAP/39DAP1.037860.997
42DAP/41DAP1.085580.8
43DAP/42DAP0.795740.321
47DAP/43DAP1.083810.998
52DAP/47DAP1.334530.402
57DAP/52DAP1.576260.158
57DAP/7DAP1.096681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.35520.053
17DAP/reference1.639610.007
27DAP/reference1.739030.007
39DAP/reference1.660660.008
41DAP/reference1.667570.024
42DAP/reference1.706690.006
43DAP/reference2.095320.007
47DAP/reference1.240480.13
52DAP/reference1.584890.007
57DAP/reference1.560110.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96890.58
17DAP/reference0.932610.245
27DAP/reference0.947070.366
39DAP/reference0.933070.113
41DAP/reference0.977950.364
42DAP/reference0.966120.289
43DAP/reference0.801830.075
47DAP/reference1.031760.572
52DAP/reference0.941150.078
57DAP/reference1.024520.957

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.303710.034
17DAP/reference1.056330.833
27DAP/reference1.497560.03
39DAP/reference1.378030.012
41DAP/reference1.173710.12
42DAP/reference1.326210.07
43DAP/reference1.255230.219
47DAP/reference0.976920.509
52DAP/reference2.225210.058
57DAP/reference1.189730.452

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.441180.966
26DAP/20DAP1.206210.342
34DAP/26DAP1.04231
51DAP/34DAP1.845640.081
52DAP/51DAP1.063661
53DAP/52DAP1.255760.662
55DAP/53DAP0.885960.363
57DAP/55DAP1.000470.93
62DAP/57DAP1.089870.833
68DAP/62DAP1.274340.864
68DAP/14DAP1.322740.049

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.890370.399

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.907440.539
Mature Green Tomato/Ripe Tomato4.144880.016
Immature Eggplant/Mature Eggplant0.86870.197
Ripe Pepper/Ripe Tomato1.199091
Mature Eggplant/Ripe Tomato1.93760.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.996811
1-1-2/M821.092641
12-2/M821.022021
12-4/M820.989770.619
1-3/M820.997091
2-1-1/M821.062940.764
2-1/M821.22392
2-6/M820.980021
3-2/M821.0089
4-1-1/M820.932271
4-1/M821.01886
4-3-2/M820.83169
4-3/M821.004190.268
5-3/M821.100590.572
6-2/M821.012951
6-3/M821.021891
7-1/M820.95449
7-2/M821.11180.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.73268
IL2-6/WTpooled1.44436
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.948011
IL12-4/WTpooled1.12009
IL1-4/WTpooled0.815730.834
WT/WTpooled1.0621

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.119541

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.000791
DC3000/delta hrp 6h1.072311
DC3000/delta hrp 12h1.0671
DC3000/delta hrp 24h1.038680.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.59715
DC3000 delta B/DC3000 delta AB0.71187

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.063061
Exp 36h1.116751
Exp 60h1.058261

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.041821
Var 0hN/AN/A
Var 12h I row2-row10.935020.565
Var 12h NI row2-row11.225050.235
Var 36h I row2-row11.222790.309
Var 36h NI row2-row11.363751
Var 60h I row2-row10.928650.582
Var 60h NI row2-row11.151291
Time course 0hI-0hNI0.872020.196
Time course 12hI-12hNI1.419210.013
Time course 36hI-36hNI1.303620.023
Time course 60hI-60hNI1.60620.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.919210.246
transgenic ySAMdc/azygous control (breaker)0.859390.173
transgenic ySAMdc/azygous control (red)1.052680.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.022850.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.85750.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.082441
Manapal/WT (break)0.982411
Manapal/WT (red)0.969010.863