Expression of 1-1-6.4.20.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.74960.77
27DAP/17DAP0.962620.928
39DAP/27DAP1.097570.798
41DAP/39DAP1.545350.459
42DAP/41DAP0.772131
43DAP/42DAP0.872350.77
47DAP/43DAP1.041150.744
52DAP/47DAP2.306850.068
57DAP/52DAP0.841710.824

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.992740.616
17DAP/reference1.277530.04
27DAP/reference1.009020.966
39DAP/reference1.029640.639
41DAP/reference1.25990.079
42DAP/reference0.93480.072
43DAP/reference0.988490.785
47DAP/reference0.993550.602
52DAP/reference0.895340.172
57DAP/reference0.846850.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.313060.076
27DAP/17DAP1.09190.912
39DAP/27DAP0.889030.482
41DAP/39DAP1.155560.735
42DAP/41DAP0.706830.031
43DAP/42DAP1.03881
47DAP/43DAP1.288050.735
52DAP/47DAP1.086530.933
57DAP/52DAP0.982670.695
57DAP/7DAP2.06979

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994310.682
17DAP/reference0.961650.389
27DAP/reference0.880440.159
39DAP/reference0.918080.354
41DAP/reference0.884640.194
42DAP/reference0.82560.169
43DAP/reference1.007140.637
47DAP/reference0.905460.383
52DAP/reference0.724860.033
57DAP/reference1.183430.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.979630.706
17DAP/reference1.101530.806
27DAP/reference0.935650.393
39DAP/reference0.837780.022
41DAP/reference0.859360.096
42DAP/reference0.850730.061
43DAP/reference1.17730.122
47DAP/reference0.932530.133
52DAP/reference0.983960.5
57DAP/reference0.999780.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.117890.659
17DAP/reference0.991670.739
27DAP/reference0.863120.056
39DAP/reference0.983650.643
41DAP/reference0.828710.148
42DAP/reference1.013650.816
43DAP/reference0.917970.319
47DAP/reference1.011751
52DAP/reference1.041860.838
57DAP/reference1.192760.694

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.160130.966
26DAP/20DAP1.054771
34DAP/26DAP0.922150.879
51DAP/34DAP0.973360.856
52DAP/51DAP1.133120.848
53DAP/52DAP1.306530.537
55DAP/53DAP0.885570.293
57DAP/55DAP1.348720.144
62DAP/57DAP1.146080.935
68DAP/62DAP0.991470.914
68DAP/14DAP0.723870.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.046960.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.349330.017
Immature Eggplant/Mature Eggplant0.73242
Ripe Pepper/Ripe Tomato0.5375
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.43324
12-2/M82N/AN/A
12-4/M820.952911
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.92717
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.14004
5-3/M820.91237
6-2/M820.96115
6-3/M821.5988
7-1/M820.98056
7-2/M820.87929
9-3-2/M820.93950.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.84099

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.113530.875
DC3000/delta hrp 6h1.02045
DC3000/delta hrp 12h0.881891
DC3000/delta hrp 24h0.833370.088

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.975641
Exp 36hN/AN/A
Exp 60h0.828580.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.85722
Var 12h NI row2-row10.75677
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row15.165481
Var 60h I row2-row11.399510.562
Var 60h NI row2-row10.591490.977
Time course 0hI-0hNI1.659440.867
Time course 12hI-12hNI0.818530.759
Time course 36hI-36hNI0.642180.117
Time course 60hI-60hNI0.958440.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.804090.338
transgenic ySAMdc/azygous control (breaker)0.861250.49
transgenic ySAMdc/azygous control (red)1.041330.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.975210.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.196010.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.193510.307
Manapal/WT (break)0.730030.333
Manapal/WT (red)0.57740.229