Expression of 1-1-6.4.20.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.7496 | 0.77 |
27DAP/17DAP | 0.96262 | 0.928 |
39DAP/27DAP | 1.09757 | 0.798 |
41DAP/39DAP | 1.54535 | 0.459 |
42DAP/41DAP | 0.77213 | 1 |
43DAP/42DAP | 0.87235 | 0.77 |
47DAP/43DAP | 1.04115 | 0.744 |
52DAP/47DAP | 2.30685 | 0.068 |
57DAP/52DAP | 0.84171 | 0.824 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99274 | 0.616 |
17DAP/reference | 1.27753 | 0.04 |
27DAP/reference | 1.00902 | 0.966 |
39DAP/reference | 1.02964 | 0.639 |
41DAP/reference | 1.2599 | 0.079 |
42DAP/reference | 0.9348 | 0.072 |
43DAP/reference | 0.98849 | 0.785 |
47DAP/reference | 0.99355 | 0.602 |
52DAP/reference | 0.89534 | 0.172 |
57DAP/reference | 0.84685 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.31306 | 0.076 |
27DAP/17DAP | 1.0919 | 0.912 |
39DAP/27DAP | 0.88903 | 0.482 |
41DAP/39DAP | 1.15556 | 0.735 |
42DAP/41DAP | 0.70683 | 0.031 |
43DAP/42DAP | 1.0388 | 1 |
47DAP/43DAP | 1.28805 | 0.735 |
52DAP/47DAP | 1.08653 | 0.933 |
57DAP/52DAP | 0.98267 | 0.695 |
57DAP/7DAP | 2.06979 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99431 | 0.682 |
17DAP/reference | 0.96165 | 0.389 |
27DAP/reference | 0.88044 | 0.159 |
39DAP/reference | 0.91808 | 0.354 |
41DAP/reference | 0.88464 | 0.194 |
42DAP/reference | 0.8256 | 0.169 |
43DAP/reference | 1.00714 | 0.637 |
47DAP/reference | 0.90546 | 0.383 |
52DAP/reference | 0.72486 | 0.033 |
57DAP/reference | 1.18343 | 0.198 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97963 | 0.706 |
17DAP/reference | 1.10153 | 0.806 |
27DAP/reference | 0.93565 | 0.393 |
39DAP/reference | 0.83778 | 0.022 |
41DAP/reference | 0.85936 | 0.096 |
42DAP/reference | 0.85073 | 0.061 |
43DAP/reference | 1.1773 | 0.122 |
47DAP/reference | 0.93253 | 0.133 |
52DAP/reference | 0.98396 | 0.5 |
57DAP/reference | 0.99978 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11789 | 0.659 |
17DAP/reference | 0.99167 | 0.739 |
27DAP/reference | 0.86312 | 0.056 |
39DAP/reference | 0.98365 | 0.643 |
41DAP/reference | 0.82871 | 0.148 |
42DAP/reference | 1.01365 | 0.816 |
43DAP/reference | 0.91797 | 0.319 |
47DAP/reference | 1.01175 | 1 |
52DAP/reference | 1.04186 | 0.838 |
57DAP/reference | 1.19276 | 0.694 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16013 | 0.966 |
26DAP/20DAP | 1.05477 | 1 |
34DAP/26DAP | 0.92215 | 0.879 |
51DAP/34DAP | 0.97336 | 0.856 |
52DAP/51DAP | 1.13312 | 0.848 |
53DAP/52DAP | 1.30653 | 0.537 |
55DAP/53DAP | 0.88557 | 0.293 |
57DAP/55DAP | 1.34872 | 0.144 |
62DAP/57DAP | 1.14608 | 0.935 |
68DAP/62DAP | 0.99147 | 0.914 |
68DAP/14DAP | 0.72387 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04696 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.34933 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.73242 | |
Ripe Pepper/Ripe Tomato | 0.5375 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.43324 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.95291 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.92717 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.14004 | |
5-3/M82 | 0.91237 | |
6-2/M82 | 0.96115 | |
6-3/M82 | 1.5988 | |
7-1/M82 | 0.98056 | |
7-2/M82 | 0.87929 | |
9-3-2/M82 | 0.9395 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84099 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11353 | 0.875 |
DC3000/delta hrp 6h | 1.02045 | |
DC3000/delta hrp 12h | 0.88189 | 1 |
DC3000/delta hrp 24h | 0.83337 | 0.088 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97564 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.82858 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.85722 | |
Var 12h NI row2-row1 | 0.75677 | |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 5.16548 | 1 |
Var 60h I row2-row1 | 1.39951 | 0.562 |
Var 60h NI row2-row1 | 0.59149 | 0.977 |
Time course 0hI-0hNI | 1.65944 | 0.867 |
Time course 12hI-12hNI | 0.81853 | 0.759 |
Time course 36hI-36hNI | 0.64218 | 0.117 |
Time course 60hI-60hNI | 0.95844 | 0.187 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.80409 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 0.86125 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.04133 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97521 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19601 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19351 | 0.307 |
Manapal/WT (break) | 0.73003 | 0.333 |
Manapal/WT (red) | 0.5774 | 0.229 |
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