Expression of 1-1-6.4.3.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20444 | 0.739 |
27DAP/17DAP | 1.49285 | 0.708 |
39DAP/27DAP | 4.1868 | 0.021 |
41DAP/39DAP | 1.61375 | 0.212 |
42DAP/41DAP | 3.21786 | 0.029 |
43DAP/42DAP | 2.67385 | 0.756 |
47DAP/43DAP | 0.97642 | 0.821 |
52DAP/47DAP | 0.54265 | 0.048 |
57DAP/52DAP | 1.56773 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.35729 | 0.029 |
17DAP/reference | 0.10663 | 0.006 |
27DAP/reference | 0.37695 | 0.023 |
39DAP/reference | 0.54126 | 0.178 |
41DAP/reference | 0.31304 | 0.008 |
42DAP/reference | 1.92892 | 0.072 |
43DAP/reference | 3.81142 | |
47DAP/reference | 1.50889 | 0.096 |
52DAP/reference | 1.16125 | 0.272 |
57DAP/reference | 2.46283 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.60476 | 0.036 |
27DAP/17DAP | 1.03977 | 0.9 |
39DAP/27DAP | 1.81362 | 0.063 |
41DAP/39DAP | 0.76066 | 0.347 |
42DAP/41DAP | 1.98909 | 0.002 |
43DAP/42DAP | 2.95561 | 0.014 |
47DAP/43DAP | 0.87948 | 0.418 |
52DAP/47DAP | 1.00959 | 0.93 |
57DAP/52DAP | 1.06286 | 0.768 |
57DAP/7DAP | 3.72345 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.09907 | 0.039 |
17DAP/reference | 0.1521 | 0.011 |
27DAP/reference | 0.1361 | 0.01 |
39DAP/reference | 0.65329 | 0.056 |
41DAP/reference | 0.46042 | 0.032 |
42DAP/reference | 0.97164 | 0.415 |
43DAP/reference | 2.14184 | 0.015 |
47DAP/reference | 2.47747 | 0.081 |
52DAP/reference | 0.72765 | 0.035 |
57DAP/reference | 0.62218 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.07733 | 0.004 |
17DAP/reference | 0.07562 | 0.003 |
27DAP/reference | 0.11819 | 0.005 |
39DAP/reference | 0.15958 | 0.008 |
41DAP/reference | 0.13123 | 0.005 |
42DAP/reference | 0.13769 | 0.01 |
43DAP/reference | 0.22273 | 0.002 |
47DAP/reference | 0.24437 | 0.013 |
52DAP/reference | 0.16421 | 0.004 |
57DAP/reference | 0.14589 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.09121 | 0.018 |
17DAP/reference | 1.01249 | 0.089 |
27DAP/reference | 0.12161 | 0.02 |
39DAP/reference | 0.27347 | 0.008 |
41DAP/reference | 0.41443 | 0.018 |
42DAP/reference | 3.80551 | 0.006 |
43DAP/reference | 5.91785 | 0.006 |
47DAP/reference | 2.42545 | 0.006 |
52DAP/reference | 4.39572 | 0.029 |
57DAP/reference | 1.38937 | 0.428 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 23.362 | 0.966 |
26DAP/20DAP | 1.13243 | 0.604 |
34DAP/26DAP | 0.88216 | 0.693 |
51DAP/34DAP | 0.90994 | 0.791 |
52DAP/51DAP | 0.94492 | 1 |
53DAP/52DAP | 1.17977 | 0.537 |
55DAP/53DAP | 1.11252 | 0.696 |
57DAP/55DAP | 0.78795 | 0.197 |
62DAP/57DAP | 4.68135 | 0.994 |
68DAP/62DAP | 23.9314 | 0.202 |
68DAP/14DAP | 14.0386 | 0.739 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 36.7916 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 30.0021 | 0.666 |
Mature Green Tomato/Ripe Tomato | 0.1758 | 0.017 |
Immature Eggplant/Mature Eggplant | 3.78474 | 1 |
Ripe Pepper/Ripe Tomato | 0.17832 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.10855 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01121 | 1 |
1-1-2/M82 | 1.12819 | 1 |
12-2/M82 | 1.09095 | 1 |
12-4/M82 | 1.18744 | 1 |
1-3/M82 | 1.85038 | 0.277 |
2-1-1/M82 | 0.85391 | 0.565 |
2-1/M82 | 0.9982 | 1 |
2-6/M82 | 0.95664 | 0.501 |
3-2/M82 | 1.02799 | 0.967 |
4-1-1/M82 | 0.83825 | 1 |
4-1/M82 | 1.80321 | 1 |
4-3-2/M82 | 1.00522 | 1 |
4-3/M82 | 0.94274 | 0.72 |
5-3/M82 | 0.9748 | 1 |
6-2/M82 | 1.01718 | 1 |
6-3/M82 | 0.95852 | 1 |
7-1/M82 | 1.03154 | 1 |
7-2/M82 | 1.01125 | 1 |
9-3-2/M82 | 0.8099 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.6911 | 0.243 |
IL2-6/WTpooled | 1.21029 | 0.46 |
IL7-5/WTpooled | 0.89211 | 1 |
IL7-3/WTpooled | 0.5808 | 0.298 |
IL12-4/WTpooled | 0.95026 | 0.71 |
IL1-4/WTpooled | 0.96102 | 1 |
WT/WTpooled | 1.00752 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12727 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06924 | 0.921 |
DC3000/delta hrp 6h | 9.53302 | 1 |
DC3000/delta hrp 12h | 1.1046 | 1 |
DC3000/delta hrp 24h | 0.58419 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13996 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.17531 | 0.269 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.65458 | 1 |
Exp 36h | 2.18511 | 0.489 |
Exp 60h | 1.41062 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00537 | 1 |
Var 0h | 0.57417 | 0.374 |
Var 12h I row2-row1 | 0.9283 | 0.353 |
Var 12h NI row2-row1 | 1.01235 | 1 |
Var 36h I row2-row1 | 1.10961 | 1 |
Var 36h NI row2-row1 | 1.02426 | 1 |
Var 60h I row2-row1 | 0.97903 | 0.952 |
Var 60h NI row2-row1 | 0.9135 | 0.516 |
Time course 0hI-0hNI | 0.99341 | 1 |
Time course 12hI-12hNI | 0.96931 | 0.716 |
Time course 36hI-36hNI | 0.93678 | 0.129 |
Time course 60hI-60hNI | 0.9474 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.43184 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.13868 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.03732 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 3.12641 | 0.018 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.55249 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.29625 | 1 |
Manapal/WT (break) | 1.00675 | 1 |
Manapal/WT (red) | 0.73506 | 0.187 |
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