Expression of 1-1-6.4.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.204440.739
27DAP/17DAP1.492850.708
39DAP/27DAP4.18680.021
41DAP/39DAP1.613750.212
42DAP/41DAP3.217860.029
43DAP/42DAP2.673850.756
47DAP/43DAP0.976420.821
52DAP/47DAP0.542650.048
57DAP/52DAP1.567730.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.357290.029
17DAP/reference0.106630.006
27DAP/reference0.376950.023
39DAP/reference0.541260.178
41DAP/reference0.313040.008
42DAP/reference1.928920.072
43DAP/reference3.81142
47DAP/reference1.508890.096
52DAP/reference1.161250.272
57DAP/reference2.46283

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.604760.036
27DAP/17DAP1.039770.9
39DAP/27DAP1.813620.063
41DAP/39DAP0.760660.347
42DAP/41DAP1.989090.002
43DAP/42DAP2.955610.014
47DAP/43DAP0.879480.418
52DAP/47DAP1.009590.93
57DAP/52DAP1.062860.768
57DAP/7DAP3.723450.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.099070.039
17DAP/reference0.15210.011
27DAP/reference0.13610.01
39DAP/reference0.653290.056
41DAP/reference0.460420.032
42DAP/reference0.971640.415
43DAP/reference2.141840.015
47DAP/reference2.477470.081
52DAP/reference0.727650.035
57DAP/reference0.622180.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.077330.004
17DAP/reference0.075620.003
27DAP/reference0.118190.005
39DAP/reference0.159580.008
41DAP/reference0.131230.005
42DAP/reference0.137690.01
43DAP/reference0.222730.002
47DAP/reference0.244370.013
52DAP/reference0.164210.004
57DAP/reference0.145890.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.091210.018
17DAP/reference1.012490.089
27DAP/reference0.121610.02
39DAP/reference0.273470.008
41DAP/reference0.414430.018
42DAP/reference3.805510.006
43DAP/reference5.917850.006
47DAP/reference2.425450.006
52DAP/reference4.395720.029
57DAP/reference1.389370.428

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP23.3620.966
26DAP/20DAP1.132430.604
34DAP/26DAP0.882160.693
51DAP/34DAP0.909940.791
52DAP/51DAP0.944921
53DAP/52DAP1.179770.537
55DAP/53DAP1.112520.696
57DAP/55DAP0.787950.197
62DAP/57DAP4.681350.994
68DAP/62DAP23.93140.202
68DAP/14DAP14.03860.739

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker36.79160.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper30.00210.666
Mature Green Tomato/Ripe Tomato0.17580.017
Immature Eggplant/Mature Eggplant3.784741
Ripe Pepper/Ripe Tomato0.178320.224
Mature Eggplant/Ripe Tomato0.108550.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.011211
1-1-2/M821.128191
12-2/M821.090951
12-4/M821.187441
1-3/M821.850380.277
2-1-1/M820.853910.565
2-1/M820.99821
2-6/M820.956640.501
3-2/M821.027990.967
4-1-1/M820.838251
4-1/M821.803211
4-3-2/M821.005221
4-3/M820.942740.72
5-3/M820.97481
6-2/M821.017181
6-3/M820.958521
7-1/M821.031541
7-2/M821.011251
9-3-2/M820.80990.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.69110.243
IL2-6/WTpooled1.210290.46
IL7-5/WTpooled0.892111
IL7-3/WTpooled0.58080.298
IL12-4/WTpooled0.950260.71
IL1-4/WTpooled0.961021
WT/WTpooled1.007521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.127270.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.069240.921
DC3000/delta hrp 6h9.533021
DC3000/delta hrp 12h1.10461
DC3000/delta hrp 24h0.584190.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.139960.408
DC3000 delta B/DC3000 delta AB1.175310.269

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.654581
Exp 36h2.185110.489
Exp 60h1.410621

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.005371
Var 0h0.574170.374
Var 12h I row2-row10.92830.353
Var 12h NI row2-row11.012351
Var 36h I row2-row11.109611
Var 36h NI row2-row11.024261
Var 60h I row2-row10.979030.952
Var 60h NI row2-row10.91350.516
Time course 0hI-0hNI0.993411
Time course 12hI-12hNI0.969310.716
Time course 36hI-36hNI0.936780.129
Time course 60hI-60hNI0.94740.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.431840.246
transgenic ySAMdc/azygous control (breaker)1.138680.248
transgenic ySAMdc/azygous control (red)1.037320.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control3.126410.018

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt3.552490.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.296251
Manapal/WT (break)1.006751
Manapal/WT (red)0.735060.187