Expression of 1-1-6.4.3.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.195740.575
27DAP/17DAP1.108850.859
39DAP/27DAP1.507080.152
41DAP/39DAP1.744110.722
42DAP/41DAP0.958421
43DAP/42DAP1.58780.835
47DAP/43DAP3.379720.733
52DAP/47DAP1.683160.371
57DAP/52DAP1.094730.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.492590.587
17DAP/reference0.857840.104
27DAP/reference0.936390.654
39DAP/reference1.158380.828
41DAP/reference0.902080.114
42DAP/reference1.185290.628
43DAP/reference5.52544
47DAP/reference1.3529
52DAP/reference1.07731
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.24913
27DAP/17DAP1.416220.518
39DAP/27DAP0.523670.201
41DAP/39DAP0.804940.793
42DAP/41DAP2.103090.036
43DAP/42DAP2.19537
47DAP/43DAP0.644510.072
52DAP/47DAP1.086550.962
57DAP/52DAP0.962540.768
57DAP/7DAP0.59954

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.934340.402
17DAP/reference1.097230.688
27DAP/reference1.06630.804
39DAP/reference1.121210.175
41DAP/reference1.172040.26
42DAP/reference1.203980.308
43DAP/reference1.006811
47DAP/reference0.95380.671
52DAP/reference1.249270.086
57DAP/reference0.959410.302

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.752090.157
17DAP/reference0.773720.297
27DAP/reference0.932960.366
39DAP/reference0.911120.392
41DAP/reference0.779710.006
42DAP/reference2.084760.115
43DAP/reference1.068810.949
47DAP/reference1.209350.282
52DAP/reference0.64936
57DAP/reference0.85690.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.024340.804
17DAP/reference0.973580.727
27DAP/reference0.98720.763
39DAP/reference1.04730.819
41DAP/reference1.423630.021
42DAP/reference1.18450.321
43DAP/reference1.282820.223
47DAP/reference1.143150.754
52DAP/reference1.376310.272
57DAP/reference0.93529

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.928070.43
26DAP/20DAPN/AN/A
34DAP/26DAP0.63103
51DAP/34DAP1.240710.118
52DAP/51DAPN/AN/A
53DAP/52DAP1.184480.935
55DAP/53DAP1.08420.939
57DAP/55DAP0.45266
62DAP/57DAP0.44413
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.292280.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.05809
Mature Eggplant/Ripe Tomato0.04230.231

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.928360.934
1-1-2/M821.017961
12-2/M821.025461
12-4/M820.992980.272
1-3/M821.874620.26
2-1-1/M820.819990.683
2-1/M820.66350.74
2-6/M820.996321
3-2/M821.74553
4-1-1/M821.038891
4-1/M820.95665
4-3-2/M822.06032
4-3/M821.083981
5-3/M820.811361
6-2/M820.974151
6-3/M821.086651
7-1/M820.880220.803
7-2/M820.727380.578
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.08011
IL2-6/WTpooled0.964721
IL7-5/WTpooled1.140631
IL7-3/WTpooled0.976481
IL12-4/WTpooled0.734760.543
IL1-4/WTpooled1.024981
WT/WTpooled1.012451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.017331
DC3000/delta hrp 6h1.01591
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.985410.957

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h3.28334
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row12.08842
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.206360.181