Expression of 1-1-6.4.3.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22658 | 0.523 |
27DAP/17DAP | 0.78995 | 0.677 |
39DAP/27DAP | 1.45027 | 0.42 |
41DAP/39DAP | 0.88664 | 0.761 |
42DAP/41DAP | 1.52185 | 0.614 |
43DAP/42DAP | 1.35239 | 0.854 |
47DAP/43DAP | 1.14094 | 0.756 |
52DAP/47DAP | 1.48381 | 0.588 |
57DAP/52DAP | 1.30504 | 0.764 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84413 | 0.083 |
17DAP/reference | 0.73723 | 0.009 |
27DAP/reference | 0.91323 | 0.083 |
39DAP/reference | 0.74502 | 0.012 |
41DAP/reference | 0.65558 | 0.008 |
42DAP/reference | 0.89083 | 0.048 |
43DAP/reference | 0.87496 | 0.04 |
47DAP/reference | 1.00399 | 0.636 |
52DAP/reference | 1.15146 | 0.335 |
57DAP/reference | 1.2826 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07692 | 0.642 |
27DAP/17DAP | 1.00505 | 1 |
39DAP/27DAP | 1.17387 | 0.262 |
41DAP/39DAP | 1.07479 | 0.801 |
42DAP/41DAP | 1.01356 | 1 |
43DAP/42DAP | 0.90514 | 0.105 |
47DAP/43DAP | 1.10095 | 0.414 |
52DAP/47DAP | 1.11938 | 0.552 |
57DAP/52DAP | 1.1191 | 0.674 |
57DAP/7DAP | 1.52164 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14063 | 0.09 |
17DAP/reference | 1.24298 | 0.123 |
27DAP/reference | 1.22492 | 0.107 |
39DAP/reference | 1.25905 | 0.036 |
41DAP/reference | 1.22291 | 0.05 |
42DAP/reference | 1.2788 | 0.046 |
43DAP/reference | 1.08751 | 0.637 |
47DAP/reference | 1.12866 | 0.331 |
52DAP/reference | 1.51407 | 0.019 |
57DAP/reference | 1.55953 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79059 | 0.025 |
17DAP/reference | 0.66081 | 0.003 |
27DAP/reference | 0.95542 | 0.423 |
39DAP/reference | 1.04819 | 1 |
41DAP/reference | 1.10295 | 0.573 |
42DAP/reference | 0.91808 | 0.261 |
43DAP/reference | 0.78562 | 0.062 |
47DAP/reference | 0.81908 | 0.012 |
52DAP/reference | 0.97811 | 0.433 |
57DAP/reference | 0.80601 | 0.079 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15643 | 0.386 |
17DAP/reference | 1.04818 | 0.9 |
27DAP/reference | 1.49191 | 0.03 |
39DAP/reference | 1.5816 | 0.021 |
41DAP/reference | 1.17559 | 0.162 |
42DAP/reference | 1.31013 | 0.036 |
43DAP/reference | 1.1789 | 0.439 |
47DAP/reference | 1.007 | 0.731 |
52DAP/reference | 1.35144 | 0.136 |
57DAP/reference | 1.56892 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91491 | 1 |
26DAP/20DAP | 1.01743 | 1 |
34DAP/26DAP | 0.97142 | 0.94 |
51DAP/34DAP | 0.94132 | 0.631 |
52DAP/51DAP | 1.13561 | 0.616 |
53DAP/52DAP | 0.9638 | 0.824 |
55DAP/53DAP | 1.16733 | 0.067 |
57DAP/55DAP | 0.86405 | 0.506 |
62DAP/57DAP | 1.42956 | 0.185 |
68DAP/62DAP | 2.41926 | 0.115 |
68DAP/14DAP | 3.3691 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.06984 | 0.908 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.44405 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.5396 | 0.299 |
Immature Eggplant/Mature Eggplant | 0.90919 | 0.912 |
Ripe Pepper/Ripe Tomato | 1.36181 | 1 |
Mature Eggplant/Ripe Tomato | 1.17366 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.83507 | |
1-1-2/M82 | 1.04263 | 1 |
12-2/M82 | 0.82331 | |
12-4/M82 | 0.76642 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.59719 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.59708 | |
3-2/M82 | 0.81393 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.4342 | |
4-3/M82 | 0.68181 | 0.46 |
5-3/M82 | 1.29261 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.94348 | |
7-1/M82 | 0.60929 | |
7-2/M82 | 1.16662 | |
9-3-2/M82 | 1.50063 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.32806 | 0.277 |
IL2-6/WTpooled | 0.97915 | |
IL7-5/WTpooled | 1.08215 | 1 |
IL7-3/WTpooled | 2.1652 | 1 |
IL12-4/WTpooled | 1.09112 | 0.673 |
IL1-4/WTpooled | 0.88845 | 1 |
WT/WTpooled | 0.98572 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18084 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0509 | 0.875 |
DC3000/delta hrp 6h | 0.95524 | 0.95 |
DC3000/delta hrp 12h | 0.86076 | 1 |
DC3000/delta hrp 24h | 0.60666 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11189 | 0.076 |
DC3000 delta B/DC3000 delta AB | 0.99979 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04932 | 1 |
Exp 36h | 1.34302 | 1 |
Exp 60h | 0.79011 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97856 | 1 |
Var 0h | 0.90304 | 0.936 |
Var 12h I row2-row1 | 1.13738 | 0.692 |
Var 12h NI row2-row1 | 1.04504 | 0.649 |
Var 36h I row2-row1 | 1.11512 | 0.298 |
Var 36h NI row2-row1 | 0.95034 | 0.791 |
Var 60h I row2-row1 | 1.62818 | 0.562 |
Var 60h NI row2-row1 | 0.99377 | 1 |
Time course 0hI-0hNI | 0.96084 | 0.721 |
Time course 12hI-12hNI | 0.98453 | 0.931 |
Time course 36hI-36hNI | 1.11994 | 0.147 |
Time course 60hI-60hNI | 2.6494 | 0.187 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.22759 | 0.212 |
transgenic ySAMdc/azygous control (breaker) | 1.36295 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.09394 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.19581 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72563 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.79155 | 0.172 |
Manapal/WT (break) | 1.30635 | 0.183 |
Manapal/WT (red) | 1.06077 | 1 |
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