Expression of 1-1-6.4.3.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.226580.523
27DAP/17DAP0.789950.677
39DAP/27DAP1.450270.42
41DAP/39DAP0.886640.761
42DAP/41DAP1.521850.614
43DAP/42DAP1.352390.854
47DAP/43DAP1.140940.756
52DAP/47DAP1.483810.588
57DAP/52DAP1.305040.764

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.844130.083
17DAP/reference0.737230.009
27DAP/reference0.913230.083
39DAP/reference0.745020.012
41DAP/reference0.655580.008
42DAP/reference0.890830.048
43DAP/reference0.874960.04
47DAP/reference1.003990.636
52DAP/reference1.151460.335
57DAP/reference1.28260.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.076920.642
27DAP/17DAP1.005051
39DAP/27DAP1.173870.262
41DAP/39DAP1.074790.801
42DAP/41DAP1.013561
43DAP/42DAP0.905140.105
47DAP/43DAP1.100950.414
52DAP/47DAP1.119380.552
57DAP/52DAP1.11910.674
57DAP/7DAP1.521640.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.140630.09
17DAP/reference1.242980.123
27DAP/reference1.224920.107
39DAP/reference1.259050.036
41DAP/reference1.222910.05
42DAP/reference1.27880.046
43DAP/reference1.087510.637
47DAP/reference1.128660.331
52DAP/reference1.514070.019
57DAP/reference1.559530.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.790590.025
17DAP/reference0.660810.003
27DAP/reference0.955420.423
39DAP/reference1.048191
41DAP/reference1.102950.573
42DAP/reference0.918080.261
43DAP/reference0.785620.062
47DAP/reference0.819080.012
52DAP/reference0.978110.433
57DAP/reference0.806010.079

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.156430.386
17DAP/reference1.048180.9
27DAP/reference1.491910.03
39DAP/reference1.58160.021
41DAP/reference1.175590.162
42DAP/reference1.310130.036
43DAP/reference1.17890.439
47DAP/reference1.0070.731
52DAP/reference1.351440.136
57DAP/reference1.568920.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.914911
26DAP/20DAP1.017431
34DAP/26DAP0.971420.94
51DAP/34DAP0.941320.631
52DAP/51DAP1.135610.616
53DAP/52DAP0.96380.824
55DAP/53DAP1.167330.067
57DAP/55DAP0.864050.506
62DAP/57DAP1.429560.185
68DAP/62DAP2.419260.115
68DAP/14DAP3.36910.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.069840.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.444050.075
Mature Green Tomato/Ripe Tomato1.53960.299
Immature Eggplant/Mature Eggplant0.909190.912
Ripe Pepper/Ripe Tomato1.361811
Mature Eggplant/Ripe Tomato1.173661

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.83507
1-1-2/M821.042631
12-2/M820.82331
12-4/M820.766420.619
1-3/M82N/AN/A
2-1-1/M820.597190.465
2-1/M82N/AN/A
2-6/M820.59708
3-2/M820.81393
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.4342
4-3/M820.681810.46
5-3/M821.292611
6-2/M82N/AN/A
6-3/M820.94348
7-1/M820.60929
7-2/M821.16662
9-3-2/M821.50063

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.328060.277
IL2-6/WTpooled0.97915
IL7-5/WTpooled1.082151
IL7-3/WTpooled2.16521
IL12-4/WTpooled1.091120.673
IL1-4/WTpooled0.888451
WT/WTpooled0.985721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.180841

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.05090.875
DC3000/delta hrp 6h0.955240.95
DC3000/delta hrp 12h0.860761
DC3000/delta hrp 24h0.606660.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.111890.076
DC3000 delta B/DC3000 delta AB0.999791

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.049321
Exp 36h1.343021
Exp 60h0.790110.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.978561
Var 0h0.903040.936
Var 12h I row2-row11.137380.692
Var 12h NI row2-row11.045040.649
Var 36h I row2-row11.115120.298
Var 36h NI row2-row10.950340.791
Var 60h I row2-row11.628180.562
Var 60h NI row2-row10.993771
Time course 0hI-0hNI0.960840.721
Time course 12hI-12hNI0.984530.931
Time course 36hI-36hNI1.119940.147
Time course 60hI-60hNI2.64940.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.227590.212
transgenic ySAMdc/azygous control (breaker)1.362950.248
transgenic ySAMdc/azygous control (red)1.093941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.195810.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.725630.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.791550.172
Manapal/WT (break)1.306350.183
Manapal/WT (red)1.060771