Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.4.4.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.18251	0.904
27DAP/17DAP	1.47817	0.841
39DAP/27DAP	0.927	0.719
41DAP/39DAP	1.09429	0.871
42DAP/41DAP	1.08448	0.938
43DAP/42DAP	1.06062	0.945
47DAP/43DAP	1.94976	0.542
52DAP/47DAP	1.15475	0.72
57DAP/52DAP	1.02974	0.983

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06697	0.661
17DAP/reference	1.08218	0.178
27DAP/reference	0.97228	0.581
39DAP/reference	1.03758	0.628
41DAP/reference	0.99557	0.814
42DAP/reference	1.00291	0.567
43DAP/reference	1.01361	1
47DAP/reference	0.95382	0.224
52DAP/reference	0.94202	0.292
57DAP/reference	0.84253	0.017

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	N/A	N/A
27DAP/17DAP	1.32706
39DAP/27DAP	N/A	N/A
41DAP/39DAP	0.78555	0.885
42DAP/41DAP	1.00404	0.853
43DAP/42DAP	0.96212
47DAP/43DAP	0.95649	0.919
52DAP/47DAP	1.18027	0.598
57DAP/52DAP	N/A	N/A
57DAP/7DAP	0.98946	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.84972	0.072
17DAP/reference	0.92593	0.253
27DAP/reference	0.93862	0.402
39DAP/reference	0.96309	0.411
41DAP/reference	1.00211	0.811
42DAP/reference	0.91086	0.262
43DAP/reference	0.98654	0.555
47DAP/reference	0.96417	0.671
52DAP/reference	0.91515	0.163
57DAP/reference	0.91182	0.232

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05737	0.704
17DAP/reference	0.9078	0.399
27DAP/reference	0.93206	0.327
39DAP/reference	0.92736	0.416
41DAP/reference	1.0079	0.702
42DAP/reference	0.95009	0.321
43DAP/reference	0.95042	0.394
47DAP/reference	1.00425	0.812
52DAP/reference	1.19325	0.702
57DAP/reference	1.02995	0.908

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00549	1
17DAP/reference	0.99628	0.825
27DAP/reference	1.06328	0.644
39DAP/reference	0.85796	0.163
41DAP/reference	0.68649	0.086
42DAP/reference	0.89378	0.023
43DAP/reference	0.67545	0.032
47DAP/reference	0.91346	0.296
52DAP/reference	0.81509	0.177
57DAP/reference	0.76333	0.045

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.09419	0.966
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.20592
51DAP/34DAP	0.93458	0.799
52DAP/51DAP	N/A	N/A
53DAP/52DAP	1.95667	0.712
55DAP/53DAP	2.57758	0.826
57DAP/55DAP	1.24426	0.71
62DAP/57DAP	1.16386	0.678
68DAP/62DAP	0.66174	0.048
68DAP/14DAP	0.78824	0.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	2.04853	0.466

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	26.5411
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.86919	0.243
IL2-6/WTpooled	0.74141	0.473
IL7-5/WTpooled	0.71628	1
IL7-3/WTpooled	1.0466	1
IL12-4/WTpooled	0.87339	0.566
IL1-4/WTpooled	0.8996	0.562
WT/WTpooled	0.97084	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.91287
DC3000/delta hrp 6h	1.12692
DC3000/delta hrp 12h	0.93008	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.25546	0.782
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	7.50925	0.699
transgenic ySAMdc/azygous control (breaker)	2.51693	1
transgenic ySAMdc/azygous control (red)	1.6112	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.07336	0.125

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.85148	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.12775	1