Expression of 1-1-6.4.6.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.93210.699
27DAP/17DAP1.147710.841
39DAP/27DAP0.988840.782
41DAP/39DAP1.8280.159
42DAP/41DAP2.364520.021
43DAP/42DAP1.041491
47DAP/43DAP1.068870.469
52DAP/47DAP0.978760.908
57DAP/52DAP0.887670.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.991860.693
17DAP/reference1.019320.565
27DAP/reference1.001350.867
39DAP/reference1.406940.018
41DAP/reference1.330570.017
42DAP/reference1.015240.645
43DAP/reference0.972580.631
47DAP/reference0.937290.258
52DAP/reference0.928770.3
57DAP/reference1.125720.173

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.699860.841
27DAP/17DAP1.111271
39DAP/27DAP1.87430.044
41DAP/39DAP0.56750.014
42DAP/41DAP1.435270.172
43DAP/42DAP2.168260.035
47DAP/43DAP1.297030.028
52DAP/47DAP1.45470.258
57DAP/52DAP1.463190.301
57DAP/7DAP3.109960.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.575670.074
17DAP/reference0.45060.012
27DAP/reference0.534320.01
39DAP/reference0.465570.011
41DAP/reference0.627070.05
42DAP/reference0.71820.01
43DAP/reference0.790020.038
47DAP/reference0.854890.057
52DAP/reference0.574520.023
57DAP/reference0.431470.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.276780.589
17DAP/reference1.438510.015
27DAP/reference1.81420.016
39DAP/reference1.263730.016
41DAP/reference1.230540.011
42DAP/reference1.646430.013
43DAP/reference2.173160.327
47DAP/reference1.765970.008
52DAP/reference1.802270.006
57DAP/reference1.61390.018

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.505970.045
17DAP/reference0.980220.488
27DAP/reference0.54520.036
39DAP/reference0.653870.025
41DAP/reference0.843420.237
42DAP/reference1.800210.01
43DAP/reference1.690240.023
47DAP/reference1.219320.013
52DAP/reference1.556190.055
57DAP/reference1.26380.057

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.06430.966
26DAP/20DAP0.594811
34DAP/26DAP1.092261
51DAP/34DAP1.79161
52DAP/51DAP1.437050.073
53DAP/52DAP1.311550.91
55DAP/53DAP1.514520.361
57DAP/55DAP0.875770.587
62DAP/57DAP0.892240.871
68DAP/62DAP0.744670.087
68DAP/14DAP1.156850.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker22.95990.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.316170.059
Mature Green Tomato/Ripe Tomato0.371020.021
Immature Eggplant/Mature Eggplant5.2622
Ripe Pepper/Ripe Tomato0.88131
Mature Eggplant/Ripe Tomato0.082040.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.239160.877
1-1-2/M821.233021
12-2/M821.002591
12-4/M821.130541
1-3/M822.829720.248
2-1-1/M821.583210.366
2-1/M821.494311
2-6/M821.715030.329
3-2/M821.199490.717
4-1-1/M821.699881
4-1/M820.60953
4-3-2/M821.832850.284
4-3/M821.435520.268
5-3/M820.936671
6-2/M822.245341
6-3/M821.381151
7-1/M820.818350.803
7-2/M821.658720.302
9-3-2/M821.731921

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.042920.365
IL2-6/WTpooled0.813870.473
IL7-5/WTpooled1.29024
IL7-3/WTpooled0.934960.294
IL12-4/WTpooled1.042351
IL1-4/WTpooled0.972591
WT/WTpooled1.029741

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.388210.127

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.083610.894
DC3000/delta hrp 6h1.033771
DC3000/delta hrp 12h0.982291
DC3000/delta hrp 24h1.296720.09

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.85581

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.898091
Exp 36h1.246080.409
Exp 60h0.930720.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.058211
Var 0h1.053360.339
Var 12h I row2-row10.965860.627
Var 12h NI row2-row11.149830.281
Var 36h I row2-row11.114541
Var 36h NI row2-row11.22241
Var 60h I row2-row10.751670.285
Var 60h NI row2-row10.755410.292
Time course 0hI-0hNI1.052021
Time course 12hI-12hNI0.924710.719
Time course 36hI-36hNI1.7430.004
Time course 60hI-60hNI3.528880.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.049020.699
transgenic ySAMdc/azygous control (breaker)0.935931
transgenic ySAMdc/azygous control (red)1.080010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.986650.371

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.856420.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.089031
Manapal/WT (break)1.081731
Manapal/WT (red)0.831290.216