Expression of 1-1-6.4.6.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9321 | 0.699 |
27DAP/17DAP | 1.14771 | 0.841 |
39DAP/27DAP | 0.98884 | 0.782 |
41DAP/39DAP | 1.828 | 0.159 |
42DAP/41DAP | 2.36452 | 0.021 |
43DAP/42DAP | 1.04149 | 1 |
47DAP/43DAP | 1.06887 | 0.469 |
52DAP/47DAP | 0.97876 | 0.908 |
57DAP/52DAP | 0.88767 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99186 | 0.693 |
17DAP/reference | 1.01932 | 0.565 |
27DAP/reference | 1.00135 | 0.867 |
39DAP/reference | 1.40694 | 0.018 |
41DAP/reference | 1.33057 | 0.017 |
42DAP/reference | 1.01524 | 0.645 |
43DAP/reference | 0.97258 | 0.631 |
47DAP/reference | 0.93729 | 0.258 |
52DAP/reference | 0.92877 | 0.3 |
57DAP/reference | 1.12572 | 0.173 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.69986 | 0.841 |
27DAP/17DAP | 1.11127 | 1 |
39DAP/27DAP | 1.8743 | 0.044 |
41DAP/39DAP | 0.5675 | 0.014 |
42DAP/41DAP | 1.43527 | 0.172 |
43DAP/42DAP | 2.16826 | 0.035 |
47DAP/43DAP | 1.29703 | 0.028 |
52DAP/47DAP | 1.4547 | 0.258 |
57DAP/52DAP | 1.46319 | 0.301 |
57DAP/7DAP | 3.10996 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.57567 | 0.074 |
17DAP/reference | 0.4506 | 0.012 |
27DAP/reference | 0.53432 | 0.01 |
39DAP/reference | 0.46557 | 0.011 |
41DAP/reference | 0.62707 | 0.05 |
42DAP/reference | 0.7182 | 0.01 |
43DAP/reference | 0.79002 | 0.038 |
47DAP/reference | 0.85489 | 0.057 |
52DAP/reference | 0.57452 | 0.023 |
57DAP/reference | 0.43147 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27678 | 0.589 |
17DAP/reference | 1.43851 | 0.015 |
27DAP/reference | 1.8142 | 0.016 |
39DAP/reference | 1.26373 | 0.016 |
41DAP/reference | 1.23054 | 0.011 |
42DAP/reference | 1.64643 | 0.013 |
43DAP/reference | 2.17316 | 0.327 |
47DAP/reference | 1.76597 | 0.008 |
52DAP/reference | 1.80227 | 0.006 |
57DAP/reference | 1.6139 | 0.018 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.50597 | 0.045 |
17DAP/reference | 0.98022 | 0.488 |
27DAP/reference | 0.5452 | 0.036 |
39DAP/reference | 0.65387 | 0.025 |
41DAP/reference | 0.84342 | 0.237 |
42DAP/reference | 1.80021 | 0.01 |
43DAP/reference | 1.69024 | 0.023 |
47DAP/reference | 1.21932 | 0.013 |
52DAP/reference | 1.55619 | 0.055 |
57DAP/reference | 1.2638 | 0.057 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0643 | 0.966 |
26DAP/20DAP | 0.59481 | 1 |
34DAP/26DAP | 1.09226 | 1 |
51DAP/34DAP | 1.79161 | |
52DAP/51DAP | 1.43705 | 0.073 |
53DAP/52DAP | 1.31155 | 0.91 |
55DAP/53DAP | 1.51452 | 0.361 |
57DAP/55DAP | 0.87577 | 0.587 |
62DAP/57DAP | 0.89224 | 0.871 |
68DAP/62DAP | 0.74467 | 0.087 |
68DAP/14DAP | 1.15685 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 22.9599 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.31617 | 0.059 |
Mature Green Tomato/Ripe Tomato | 0.37102 | 0.021 |
Immature Eggplant/Mature Eggplant | 5.2622 | |
Ripe Pepper/Ripe Tomato | 0.8813 | 1 |
Mature Eggplant/Ripe Tomato | 0.08204 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.23916 | 0.877 |
1-1-2/M82 | 1.23302 | 1 |
12-2/M82 | 1.00259 | 1 |
12-4/M82 | 1.13054 | 1 |
1-3/M82 | 2.82972 | 0.248 |
2-1-1/M82 | 1.58321 | 0.366 |
2-1/M82 | 1.49431 | 1 |
2-6/M82 | 1.71503 | 0.329 |
3-2/M82 | 1.19949 | 0.717 |
4-1-1/M82 | 1.69988 | 1 |
4-1/M82 | 0.60953 | |
4-3-2/M82 | 1.83285 | 0.284 |
4-3/M82 | 1.43552 | 0.268 |
5-3/M82 | 0.93667 | 1 |
6-2/M82 | 2.24534 | 1 |
6-3/M82 | 1.38115 | 1 |
7-1/M82 | 0.81835 | 0.803 |
7-2/M82 | 1.65872 | 0.302 |
9-3-2/M82 | 1.73192 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.04292 | 0.365 |
IL2-6/WTpooled | 0.81387 | 0.473 |
IL7-5/WTpooled | 1.29024 | |
IL7-3/WTpooled | 0.93496 | 0.294 |
IL12-4/WTpooled | 1.04235 | 1 |
IL1-4/WTpooled | 0.97259 | 1 |
WT/WTpooled | 1.02974 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.38821 | 0.127 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08361 | 0.894 |
DC3000/delta hrp 6h | 1.03377 | 1 |
DC3000/delta hrp 12h | 0.98229 | 1 |
DC3000/delta hrp 24h | 1.29672 | 0.09 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.85581 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.89809 | 1 |
Exp 36h | 1.24608 | 0.409 |
Exp 60h | 0.93072 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05821 | 1 |
Var 0h | 1.05336 | 0.339 |
Var 12h I row2-row1 | 0.96586 | 0.627 |
Var 12h NI row2-row1 | 1.14983 | 0.281 |
Var 36h I row2-row1 | 1.11454 | 1 |
Var 36h NI row2-row1 | 1.22241 | |
Var 60h I row2-row1 | 0.75167 | 0.285 |
Var 60h NI row2-row1 | 0.75541 | 0.292 |
Time course 0hI-0hNI | 1.05202 | 1 |
Time course 12hI-12hNI | 0.92471 | 0.719 |
Time course 36hI-36hNI | 1.743 | 0.004 |
Time course 60hI-60hNI | 3.52888 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04902 | 0.699 |
transgenic ySAMdc/azygous control (breaker) | 0.93593 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08001 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98665 | 0.371 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85642 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08903 | 1 |
Manapal/WT (break) | 1.08173 | 1 |
Manapal/WT (red) | 0.83129 | 0.216 |
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