Expression of 1-1-6.4.6.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.177120.863
27DAP/17DAP1.047130.905
39DAP/27DAP1.251090.732
41DAP/39DAP0.987280.915
42DAP/41DAP1.080230.899
43DAP/42DAP0.926590.815
47DAP/43DAP1.090340.842
52DAP/47DAP0.830030.554
57DAP/52DAP1.098410.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.955190.326
17DAP/reference0.991150.777
27DAP/reference0.975820.497
39DAP/reference1.01050.8
41DAP/reference1.022740.624
42DAP/reference0.837190.002
43DAP/reference0.985990.728
47DAP/reference0.887940.038
52DAP/reference0.940740.33
57DAP/reference0.913210.165

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.272420.252
27DAP/17DAP0.838620.782
39DAP/27DAP0.842620.26
41DAP/39DAP0.997981
42DAP/41DAP1.124620.861
43DAP/42DAP0.812440.143
47DAP/43DAP1.028230.957
52DAP/47DAP1.056170.941
57DAP/52DAP0.889670.43
57DAP/7DAP0.730181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.911230.27
17DAP/reference0.957370.518
27DAP/reference0.764320.088
39DAP/reference0.887290.307
41DAP/reference0.904560.271
42DAP/reference0.750890.022
43DAP/reference0.849890.04
47DAP/reference0.898970.222
52DAP/reference1.217780.286
57DAP/reference0.941870.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.971430.655
17DAP/reference0.992630.711
27DAP/reference0.910320.249
39DAP/reference0.965350.428
41DAP/reference0.972770.412
42DAP/reference0.879180.073
43DAP/reference1.266810.235
47DAP/reference0.900120.022
52DAP/reference1.005631
57DAP/reference1.062990.409

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.031770.653
17DAP/reference1.280690.221
27DAP/reference1.128250.373
39DAP/reference0.938360.544
41DAP/reference1.116650.984
42DAP/reference1.164470.307
43DAP/reference1.028030.827
47DAP/reference0.992360.626
52DAP/reference1.259840.194
57DAP/reference0.83260.049

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.002031
26DAP/20DAP1.074540.813
34DAP/26DAP0.935170.92
51DAP/34DAP0.873870.466
52DAP/51DAP0.959721
53DAP/52DAP1.081150.797
55DAP/53DAP0.902720.632
57DAP/55DAP1.165690.87
62DAP/57DAP0.923310.871
68DAP/62DAP0.941880.787
68DAP/14DAP1.102490.487

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.186190.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.80.254
Mature Green Tomato/Ripe Tomato1.660530.016
Immature Eggplant/Mature Eggplant1.070990.222
Ripe Pepper/Ripe Tomato1.360371
Mature Eggplant/Ripe Tomato0.860931

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.958740.944
1-1-2/M821.065841
12-2/M82N/AN/A
12-4/M821.053541
1-3/M82N/AN/A
2-1-1/M821.051191
2-1/M82N/AN/A
2-6/M820.8701
3-2/M821.080530.463
4-1-1/M821.41978
4-1/M82N/AN/A
4-3-2/M820.757030.698
4-3/M821.10708
5-3/M820.982831
6-2/M820.99006
6-3/M820.936490.796
7-1/M821.56350.741
7-2/M82N/AN/A
9-3-2/M821.039531

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.25895
IL2-6/WTpooled1.479580.531
IL7-5/WTpooled1.370061
IL7-3/WTpooled1.374740.362
IL12-4/WTpooled1.145510.532
IL1-4/WTpooled1.294631
WT/WTpooled1.143631

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.846410.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.971581
DC3000/delta hrp 6h1.202251
DC3000/delta hrp 12h0.905661
DC3000/delta hrp 24h0.707220.048

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.42049
DC3000 delta B/DC3000 delta AB0.443790.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.759081
Exp 36h0.972990.943
Exp 60h0.825280.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.043961
Var 0h0.980951
Var 12h I row2-row10.830980.39
Var 12h NI row2-row10.966810.906
Var 36h I row2-row10.993951
Var 36h NI row2-row11.176910.276
Var 60h I row2-row11.058841
Var 60h NI row2-row11.095020.904
Time course 0hI-0hNI1.04920.662
Time course 12hI-12hNI0.934630.464
Time course 36hI-36hNI0.851610.038
Time course 60hI-60hNI0.198690.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.995110.931
transgenic ySAMdc/azygous control (breaker)0.998871
transgenic ySAMdc/azygous control (red)1.092611

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.076420.046

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.124110.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.301011
Manapal/WT (break)1.143510.381
Manapal/WT (red)0.871130.503