Expression of 1-1-6.4.6.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17712 | 0.863 |
27DAP/17DAP | 1.04713 | 0.905 |
39DAP/27DAP | 1.25109 | 0.732 |
41DAP/39DAP | 0.98728 | 0.915 |
42DAP/41DAP | 1.08023 | 0.899 |
43DAP/42DAP | 0.92659 | 0.815 |
47DAP/43DAP | 1.09034 | 0.842 |
52DAP/47DAP | 0.83003 | 0.554 |
57DAP/52DAP | 1.09841 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95519 | 0.326 |
17DAP/reference | 0.99115 | 0.777 |
27DAP/reference | 0.97582 | 0.497 |
39DAP/reference | 1.0105 | 0.8 |
41DAP/reference | 1.02274 | 0.624 |
42DAP/reference | 0.83719 | 0.002 |
43DAP/reference | 0.98599 | 0.728 |
47DAP/reference | 0.88794 | 0.038 |
52DAP/reference | 0.94074 | 0.33 |
57DAP/reference | 0.91321 | 0.165 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27242 | 0.252 |
27DAP/17DAP | 0.83862 | 0.782 |
39DAP/27DAP | 0.84262 | 0.26 |
41DAP/39DAP | 0.99798 | 1 |
42DAP/41DAP | 1.12462 | 0.861 |
43DAP/42DAP | 0.81244 | 0.143 |
47DAP/43DAP | 1.02823 | 0.957 |
52DAP/47DAP | 1.05617 | 0.941 |
57DAP/52DAP | 0.88967 | 0.43 |
57DAP/7DAP | 0.73018 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91123 | 0.27 |
17DAP/reference | 0.95737 | 0.518 |
27DAP/reference | 0.76432 | 0.088 |
39DAP/reference | 0.88729 | 0.307 |
41DAP/reference | 0.90456 | 0.271 |
42DAP/reference | 0.75089 | 0.022 |
43DAP/reference | 0.84989 | 0.04 |
47DAP/reference | 0.89897 | 0.222 |
52DAP/reference | 1.21778 | 0.286 |
57DAP/reference | 0.94187 | 0.314 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97143 | 0.655 |
17DAP/reference | 0.99263 | 0.711 |
27DAP/reference | 0.91032 | 0.249 |
39DAP/reference | 0.96535 | 0.428 |
41DAP/reference | 0.97277 | 0.412 |
42DAP/reference | 0.87918 | 0.073 |
43DAP/reference | 1.26681 | 0.235 |
47DAP/reference | 0.90012 | 0.022 |
52DAP/reference | 1.00563 | 1 |
57DAP/reference | 1.06299 | 0.409 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03177 | 0.653 |
17DAP/reference | 1.28069 | 0.221 |
27DAP/reference | 1.12825 | 0.373 |
39DAP/reference | 0.93836 | 0.544 |
41DAP/reference | 1.11665 | 0.984 |
42DAP/reference | 1.16447 | 0.307 |
43DAP/reference | 1.02803 | 0.827 |
47DAP/reference | 0.99236 | 0.626 |
52DAP/reference | 1.25984 | 0.194 |
57DAP/reference | 0.8326 | 0.049 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00203 | 1 |
26DAP/20DAP | 1.07454 | 0.813 |
34DAP/26DAP | 0.93517 | 0.92 |
51DAP/34DAP | 0.87387 | 0.466 |
52DAP/51DAP | 0.95972 | 1 |
53DAP/52DAP | 1.08115 | 0.797 |
55DAP/53DAP | 0.90272 | 0.632 |
57DAP/55DAP | 1.16569 | 0.87 |
62DAP/57DAP | 0.92331 | 0.871 |
68DAP/62DAP | 0.94188 | 0.787 |
68DAP/14DAP | 1.10249 | 0.487 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18619 | 0.439 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8 | 0.254 |
Mature Green Tomato/Ripe Tomato | 1.66053 | 0.016 |
Immature Eggplant/Mature Eggplant | 1.07099 | 0.222 |
Ripe Pepper/Ripe Tomato | 1.36037 | 1 |
Mature Eggplant/Ripe Tomato | 0.86093 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95874 | 0.944 |
1-1-2/M82 | 1.06584 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.05354 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.05119 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.8701 | |
3-2/M82 | 1.08053 | 0.463 |
4-1-1/M82 | 1.41978 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.75703 | 0.698 |
4-3/M82 | 1.10708 | |
5-3/M82 | 0.98283 | 1 |
6-2/M82 | 0.99006 | |
6-3/M82 | 0.93649 | 0.796 |
7-1/M82 | 1.5635 | 0.741 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.03953 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.25895 | |
IL2-6/WTpooled | 1.47958 | 0.531 |
IL7-5/WTpooled | 1.37006 | 1 |
IL7-3/WTpooled | 1.37474 | 0.362 |
IL12-4/WTpooled | 1.14551 | 0.532 |
IL1-4/WTpooled | 1.29463 | 1 |
WT/WTpooled | 1.14363 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84641 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97158 | 1 |
DC3000/delta hrp 6h | 1.20225 | 1 |
DC3000/delta hrp 12h | 0.90566 | 1 |
DC3000/delta hrp 24h | 0.70722 | 0.048 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.42049 | |
DC3000 delta B/DC3000 delta AB | 0.44379 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.75908 | 1 |
Exp 36h | 0.97299 | 0.943 |
Exp 60h | 0.82528 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04396 | 1 |
Var 0h | 0.98095 | 1 |
Var 12h I row2-row1 | 0.83098 | 0.39 |
Var 12h NI row2-row1 | 0.96681 | 0.906 |
Var 36h I row2-row1 | 0.99395 | 1 |
Var 36h NI row2-row1 | 1.17691 | 0.276 |
Var 60h I row2-row1 | 1.05884 | 1 |
Var 60h NI row2-row1 | 1.09502 | 0.904 |
Time course 0hI-0hNI | 1.0492 | 0.662 |
Time course 12hI-12hNI | 0.93463 | 0.464 |
Time course 36hI-36hNI | 0.85161 | 0.038 |
Time course 60hI-60hNI | 0.19869 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99511 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 0.99887 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09261 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07642 | 0.046 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.12411 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.30101 | 1 |
Manapal/WT (break) | 1.14351 | 0.381 |
Manapal/WT (red) | 0.87113 | 0.503 |
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