Tomato Functional Genomics Database (TFGD)

Expression of 1-1-6.4.6.18

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.89763	0.532
27DAP/17DAP	1.07922	1
39DAP/27DAP	1.02963	0.857
41DAP/39DAP	0.8323	0.412
42DAP/41DAP	1.17388	0.899
43DAP/42DAP	0.96291	0.906
47DAP/43DAP	0.99096	0.904
52DAP/47DAP	1.03175	0.96
57DAP/52DAP	0.85028	0.839

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.73474	0.028
17DAP/reference	0.90521	0.091
27DAP/reference	0.96508	0.623
39DAP/reference	1.06492	0.664
41DAP/reference	0.93042	0.154
42DAP/reference	0.87187	0.011
43DAP/reference	0.94671	0.259
47DAP/reference	0.97049	0.3
52DAP/reference	1.10345	0.73
57DAP/reference	1.12946	0.054

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.74508	0.542
27DAP/17DAP	2.3404	0.207
39DAP/27DAP	0.5815	0.092
41DAP/39DAP	0.53435
42DAP/41DAP	0.80824	0.679
43DAP/42DAP	1.05197	0.788
47DAP/43DAP	1.27148	0.848
52DAP/47DAP	0.74595	0.108
57DAP/52DAP	1.73713	0.457
57DAP/7DAP	0.70527	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.35943	0.193
17DAP/reference	1.17311	0.754
27DAP/reference	1.03384	1
39DAP/reference	1.38948	0.141
41DAP/reference	1.06371	0.767
42DAP/reference	1.44632	0.014
43DAP/reference	1.4045	0.087
47DAP/reference	0.96784	0.671
52DAP/reference	0.93946	0.435
57DAP/reference	1.22753	0.07

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.85924	0.145
17DAP/reference	0.83304	0.124
27DAP/reference	0.99204	0.663
39DAP/reference	1.12091	0.588
41DAP/reference	0.93591	0.299
42DAP/reference	0.96318	0.392
43DAP/reference	0.94905	0.45
47DAP/reference	0.82375	0.025
52DAP/reference	1.0034	1
57DAP/reference	1.03738	0.64

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.51651	0.047
17DAP/reference	1.11621	0.833
27DAP/reference	0.7927
39DAP/reference	1.4124	0.211
41DAP/reference	0.95645	0.618
42DAP/reference	0.95221	0.671
43DAP/reference	1.10237	0.734
47DAP/reference	0.94731	0.306
52DAP/reference	1.28238	0.517
57DAP/reference	1.16715	0.192

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.86822	0.841
26DAP/20DAP	1.1864
34DAP/26DAP	1.88274	0.542
51DAP/34DAP	0.77333	0.317
52DAP/51DAP	1.55389	0.431
53DAP/52DAP	0.9869	0.882
55DAP/53DAP	1.20964	0.939
57DAP/55DAP	0.75904	0.176
62DAP/57DAP	N/A	N/A
68DAP/62DAP	1.94516	0.032
68DAP/14DAP	1.92491	0.043

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.14528	1

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.97766
Mature Green Tomato/Ripe Tomato	1.33606	0.106
Immature Eggplant/Mature Eggplant	1.20282
Ripe Pepper/Ripe Tomato	1.26888	1
Mature Eggplant/Ripe Tomato	0.42354	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.15375	0.551
1-1-2/M82	1.11734	1
12-2/M82	1.01033	1
12-4/M82	0.64177	0.282
1-3/M82	1.4539
2-1-1/M82	0.70132
2-1/M82	0.79596
2-6/M82	1.09182
3-2/M82	1.17391	0.717
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	1.28971
4-3/M82	1.04713
5-3/M82	0.91992	1
6-2/M82	0.66179
6-3/M82	0.96558
7-1/M82	0.90559	1
7-2/M82	1.17714
9-3-2/M82	1.10268	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.00889	1
IL2-6/WTpooled	2.21995	0.531
IL7-5/WTpooled	1.4337	0.792
IL7-3/WTpooled	0.97758	1
IL12-4/WTpooled	1.09301	0.839
IL1-4/WTpooled	1.22824	1
WT/WTpooled	1.01912	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.98254	1
DC3000/delta hrp 6h	0.91138	0.95
DC3000/delta hrp 12h	0.60543	1
DC3000/delta hrp 24h	0.77939	0.048

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.99283	1
Exp 36h	0.79673	0.589
Exp 60h	0.74343	0.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.14094	0.216
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.21819	0.278
transgenic ySAMdc/azygous control (breaker)	1.62542	0.248
transgenic ySAMdc/azygous control (red)	1.26564	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.08021	0.059

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.95003	1
Manapal/WT (break)	0.69513	0.333
Manapal/WT (red)	3.09817	0.142