Expression of 1-1-6.4.7.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.084970.798
27DAP/17DAP1.354690.804
39DAP/27DAP1.088590.82
41DAP/39DAP1.13180.822
42DAP/41DAP1.126660.863
43DAP/42DAP1.063381
47DAP/43DAP1.283140.746
52DAP/47DAP0.842050.587
57DAP/52DAP1.171410.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.070360.265
17DAP/reference0.975460.24
27DAP/reference0.954610.101
39DAP/reference0.925760.031
41DAP/reference0.958610.154
42DAP/reference1.021280.656
43DAP/reference1.009680.928
47DAP/reference0.962220.174
52DAP/reference0.984180.564
57DAP/reference1.008140.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.031790.841
27DAP/17DAP1.006081
39DAP/27DAP0.925660.496
41DAP/39DAP1.180730.382
42DAP/41DAP1.039780.976
43DAP/42DAP1.113240.351
47DAP/43DAP1.033450.901
52DAP/47DAP0.917410.6
57DAP/52DAP1.040590.74
57DAP/7DAP0.83251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.072150.026
17DAP/reference1.471040.009
27DAP/reference1.632010.006
39DAP/reference1.284110.014
41DAP/reference1.304420.012
42DAP/reference1.683640.008
43DAP/reference1.734480.006
47DAP/reference1.192220.311
52DAP/reference1.606890.008
57DAP/reference1.229620.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.030130.812
17DAP/reference1.187460.032
27DAP/reference1.069750.497
39DAP/reference0.987210.428
41DAP/reference0.98890.545
42DAP/reference1.056220.324
43DAP/reference0.909970.307
47DAP/reference0.97420.368
52DAP/reference0.964820.302
57DAP/reference0.895570.046

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.460110.055
17DAP/reference1.104410.746
27DAP/reference1.137060.149
39DAP/reference1.242820.112
41DAP/reference1.105630.239
42DAP/reference1.365220.023
43DAP/reference1.514160.028
47DAP/reference0.92520.139
52DAP/reference1.192120.457
57DAP/reference1.096260.2

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.962091
26DAP/20DAP0.946861
34DAP/26DAP1.121341
51DAP/34DAP0.872340.492
52DAP/51DAP1.182550.207
53DAP/52DAP1.141650.413
55DAP/53DAP1.10740.964
57DAP/55DAP1.088990.87
62DAP/57DAP0.92990.05
68DAP/62DAP1.103690.878
68DAP/14DAP0.942710.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.753390.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.902230.447
Mature Green Tomato/Ripe Tomato1.331610.363
Immature Eggplant/Mature Eggplant0.953980.493
Ripe Pepper/Ripe Tomato0.876450.293
Mature Eggplant/Ripe Tomato0.549731

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.876750.934
1-1-2/M821.337471
12-2/M820.692060.74
12-4/M820.917180.619
1-3/M821.535191
2-1-1/M820.982611
2-1/M820.690250.74
2-6/M821.302630.505
3-2/M820.960291
4-1-1/M821.187451
4-1/M820.58804
4-3-2/M821.89209
4-3/M821.696381
5-3/M821.069431
6-2/M822.130951
6-3/M821.45882
7-1/M821.342080.87
7-2/M821.423671
9-3-2/M820.67273

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.983761
IL2-6/WTpooled0.873991
IL7-5/WTpooled0.981381
IL7-3/WTpooled1.062531
IL12-4/WTpooled0.899881
IL1-4/WTpooled1.013761
WT/WTpooled0.966931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.948321

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.969081
DC3000/delta hrp 6h0.958030.95
DC3000/delta hrp 12h1.038651
DC3000/delta hrp 24h0.899380.395

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.48394
DC3000 delta B/DC3000 delta AB0.732820.025

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.085481
Exp 36h1.188870.693
Exp 60h1.389480.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984561
Var 0h0.490341
Var 12h I row2-row10.867690.353
Var 12h NI row2-row10.971220.82
Var 36h I row2-row10.963041
Var 36h NI row2-row11.015831
Var 60h I row2-row11.262510.543
Var 60h NI row2-row11.059711
Time course 0hI-0hNI0.983290.947
Time course 12hI-12hNI0.98920.964
Time course 36hI-36hNI0.868360.096
Time course 60hI-60hNI0.376410.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.165370.408
transgenic ySAMdc/azygous control (breaker)1.147270.248
transgenic ySAMdc/azygous control (red)1.044130.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002140.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.702380.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.325430.086
Manapal/WT (break)0.932690.333
Manapal/WT (red)1.543450.164