Expression of 1-1-6.4.7.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00829 | 1 |
27DAP/17DAP | 1.07352 | 0.872 |
39DAP/27DAP | 0.97527 | 0.719 |
41DAP/39DAP | 0.83856 | 0.325 |
42DAP/41DAP | 1.01256 | 1 |
43DAP/42DAP | 1.02932 | 1 |
47DAP/43DAP | 1.15279 | 0.659 |
52DAP/47DAP | 0.82142 | 0.521 |
57DAP/52DAP | 1.02288 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21948 | 0.097 |
17DAP/reference | 0.89053 | 0.419 |
27DAP/reference | 0.83433 | 0.106 |
39DAP/reference | 0.91988 | 0.487 |
41DAP/reference | 0.80441 | 0.201 |
42DAP/reference | 0.91449 | 0.062 |
43DAP/reference | 0.90139 | 0.316 |
47DAP/reference | 1.05712 | 0.391 |
52DAP/reference | 0.94479 | 0.341 |
57DAP/reference | 1.04782 | 0.6 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.088 | 0.961 |
27DAP/17DAP | 1.02674 | 0.943 |
39DAP/27DAP | 0.98958 | 0.898 |
41DAP/39DAP | 1.26378 | 0.887 |
42DAP/41DAP | 1.24785 | 0.651 |
43DAP/42DAP | 0.87534 | 0.367 |
47DAP/43DAP | 0.92075 | 0.722 |
52DAP/47DAP | 1.25691 | 0.471 |
57DAP/52DAP | 1.04653 | 0.877 |
57DAP/7DAP | 1.08918 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.59373 | 0.024 |
17DAP/reference | 1.37534 | 0.007 |
27DAP/reference | 1.47086 | 0.018 |
39DAP/reference | 1.36951 | 0.009 |
41DAP/reference | 1.36536 | 0.019 |
42DAP/reference | 1.46591 | 0.012 |
43DAP/reference | 1.17313 | 0.14 |
47DAP/reference | 1.2903 | 0.036 |
52DAP/reference | 1.3677 | 0.025 |
57DAP/reference | 1.13729 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9435 | 0.564 |
17DAP/reference | 0.90536 | 0.326 |
27DAP/reference | 1.06655 | 0.79 |
39DAP/reference | 1.0924 | 1 |
41DAP/reference | 1.47221 | 0.033 |
42DAP/reference | 1.06873 | 0.543 |
43DAP/reference | 0.73547 | 0.037 |
47DAP/reference | 1.03239 | 0.89 |
52DAP/reference | 0.88155 | 0.171 |
57DAP/reference | 0.66264 | 0.026 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.15618 | 0.016 |
17DAP/reference | 1.69894 | 0.125 |
27DAP/reference | 1.45109 | 0.024 |
39DAP/reference | 1.47978 | 0.019 |
41DAP/reference | 1.43475 | 0.008 |
42DAP/reference | 1.27815 | 0.03 |
43DAP/reference | 1.27543 | 0.085 |
47DAP/reference | 0.9053 | 0.286 |
52DAP/reference | 1.01263 | 0.838 |
57DAP/reference | 1.83007 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.82704 | 0.841 |
26DAP/20DAP | 1.89921 | 0.385 |
34DAP/26DAP | 2.64632 | 1 |
51DAP/34DAP | 1.18692 | 0.911 |
52DAP/51DAP | 3.54589 | 0.033 |
53DAP/52DAP | 0.83094 | 0.167 |
55DAP/53DAP | 1.12065 | 0.444 |
57DAP/55DAP | 0.35591 | 0.011 |
62DAP/57DAP | 1.7029 | 0.005 |
68DAP/62DAP | 3.76395 | 0.066 |
68DAP/14DAP | 3.3577 | 0.021 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.53779 | 0.229 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.46619 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.50393 | 0.095 |
Immature Eggplant/Mature Eggplant | 0.70634 | 0.067 |
Ripe Pepper/Ripe Tomato | 2.77879 | 0.256 |
Mature Eggplant/Ripe Tomato | 3.55592 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1402 | 0.877 |
1-1-2/M82 | 1.07824 | 1 |
12-2/M82 | 1.34831 | 0.61 |
12-4/M82 | 1.1997 | 1 |
1-3/M82 | 1.2201 | 0.479 |
2-1-1/M82 | 0.80042 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.13998 | |
3-2/M82 | 1.22197 | 0.717 |
4-1-1/M82 | 1.02643 | |
4-1/M82 | 1.55295 | 0.444 |
4-3-2/M82 | 1.08692 | 1 |
4-3/M82 | 1.0644 | |
5-3/M82 | 1.03769 | 1 |
6-2/M82 | 0.84998 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.07913 | |
7-2/M82 | 0.86476 | 0.796 |
9-3-2/M82 | 0.92811 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.23993 | 0.277 |
IL2-6/WTpooled | 1.07693 | 0.441 |
IL7-5/WTpooled | 1.06441 | 0.792 |
IL7-3/WTpooled | 1.09598 | 1 |
IL12-4/WTpooled | 1.0434 | 0.646 |
IL1-4/WTpooled | 0.98725 | 1 |
WT/WTpooled | 1.01594 | 0.874 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.37494 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92638 | 1 |
DC3000/delta hrp 6h | 0.92603 | 0.95 |
DC3000/delta hrp 12h | 1.10615 | 1 |
DC3000/delta hrp 24h | 0.81315 | 0.438 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.83446 | 0.046 |
DC3000 delta B/DC3000 delta AB | 0.78756 | 0.085 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91513 | 0.328 |
Exp 36h | 0.91591 | 0.699 |
Exp 60h | 0.87078 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98275 | 1 |
Var 0h | 0.50964 | 1 |
Var 12h I row2-row1 | 0.91226 | 0.418 |
Var 12h NI row2-row1 | 0.97866 | 0.906 |
Var 36h I row2-row1 | 0.86822 | 1 |
Var 36h NI row2-row1 | 1.05864 | 1 |
Var 60h I row2-row1 | 1.08236 | 1 |
Var 60h NI row2-row1 | 0.98797 | 1 |
Time course 0hI-0hNI | 0.97576 | 0.903 |
Time course 12hI-12hNI | 1.00286 | 0.9 |
Time course 36hI-36hNI | 1.01828 | 0.58 |
Time course 60hI-60hNI | 0.35276 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07184 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 4.08442 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.13652 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.69762 | 0.107 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15273 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.0632 | 0.088 |
Manapal/WT (break) | 6.388 | 0.14 |
Manapal/WT (red) | 4.56782 | 0.133 |
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