Expression of 1-1-6.4.7.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.008291
27DAP/17DAP1.073520.872
39DAP/27DAP0.975270.719
41DAP/39DAP0.838560.325
42DAP/41DAP1.012561
43DAP/42DAP1.029321
47DAP/43DAP1.152790.659
52DAP/47DAP0.821420.521
57DAP/52DAP1.022881

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.219480.097
17DAP/reference0.890530.419
27DAP/reference0.834330.106
39DAP/reference0.919880.487
41DAP/reference0.804410.201
42DAP/reference0.914490.062
43DAP/reference0.901390.316
47DAP/reference1.057120.391
52DAP/reference0.944790.341
57DAP/reference1.047820.6

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.0880.961
27DAP/17DAP1.026740.943
39DAP/27DAP0.989580.898
41DAP/39DAP1.263780.887
42DAP/41DAP1.247850.651
43DAP/42DAP0.875340.367
47DAP/43DAP0.920750.722
52DAP/47DAP1.256910.471
57DAP/52DAP1.046530.877
57DAP/7DAP1.089181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.593730.024
17DAP/reference1.375340.007
27DAP/reference1.470860.018
39DAP/reference1.369510.009
41DAP/reference1.365360.019
42DAP/reference1.465910.012
43DAP/reference1.173130.14
47DAP/reference1.29030.036
52DAP/reference1.36770.025
57DAP/reference1.137290.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.94350.564
17DAP/reference0.905360.326
27DAP/reference1.066550.79
39DAP/reference1.09241
41DAP/reference1.472210.033
42DAP/reference1.068730.543
43DAP/reference0.735470.037
47DAP/reference1.032390.89
52DAP/reference0.881550.171
57DAP/reference0.662640.026

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.156180.016
17DAP/reference1.698940.125
27DAP/reference1.451090.024
39DAP/reference1.479780.019
41DAP/reference1.434750.008
42DAP/reference1.278150.03
43DAP/reference1.275430.085
47DAP/reference0.90530.286
52DAP/reference1.012630.838
57DAP/reference1.830070.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.827040.841
26DAP/20DAP1.899210.385
34DAP/26DAP2.646321
51DAP/34DAP1.186920.911
52DAP/51DAP3.545890.033
53DAP/52DAP0.830940.167
55DAP/53DAP1.120650.444
57DAP/55DAP0.355910.011
62DAP/57DAP1.70290.005
68DAP/62DAP3.763950.066
68DAP/14DAP3.35770.021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.537790.229

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.466190.058
Mature Green Tomato/Ripe Tomato1.503930.095
Immature Eggplant/Mature Eggplant0.706340.067
Ripe Pepper/Ripe Tomato2.778790.256
Mature Eggplant/Ripe Tomato3.555920.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.14020.877
1-1-2/M821.078241
12-2/M821.348310.61
12-4/M821.19971
1-3/M821.22010.479
2-1-1/M820.800420.465
2-1/M82N/AN/A
2-6/M821.13998
3-2/M821.221970.717
4-1-1/M821.02643
4-1/M821.552950.444
4-3-2/M821.086921
4-3/M821.0644
5-3/M821.037691
6-2/M820.84998
6-3/M82N/AN/A
7-1/M821.07913
7-2/M820.864760.796
9-3-2/M820.928111

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.239930.277
IL2-6/WTpooled1.076930.441
IL7-5/WTpooled1.064410.792
IL7-3/WTpooled1.095981
IL12-4/WTpooled1.04340.646
IL1-4/WTpooled0.987251
WT/WTpooled1.015940.874

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.374941

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.926381
DC3000/delta hrp 6h0.926030.95
DC3000/delta hrp 12h1.106151
DC3000/delta hrp 24h0.813150.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.834460.046
DC3000 delta B/DC3000 delta AB0.787560.085

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.915130.328
Exp 36h0.915910.699
Exp 60h0.870780.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.982751
Var 0h0.509641
Var 12h I row2-row10.912260.418
Var 12h NI row2-row10.978660.906
Var 36h I row2-row10.868221
Var 36h NI row2-row11.058641
Var 60h I row2-row11.082361
Var 60h NI row2-row10.987971
Time course 0hI-0hNI0.975760.903
Time course 12hI-12hNI1.002860.9
Time course 36hI-36hNI1.018280.58
Time course 60hI-60hNI0.352760.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.071840.798
transgenic ySAMdc/azygous control (breaker)4.084420.172
transgenic ySAMdc/azygous control (red)1.136520.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.697620.107

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.152730.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.06320.088
Manapal/WT (break)6.3880.14
Manapal/WT (red)4.567820.133