Expression of 1-1-6.4.7.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90694 | 0.511 |
27DAP/17DAP | 1.06825 | 1 |
39DAP/27DAP | 1.27501 | 0.708 |
41DAP/39DAP | 0.82781 | 0.416 |
42DAP/41DAP | 1.76483 | 0.207 |
43DAP/42DAP | 1.22206 | 0.768 |
47DAP/43DAP | 0.87771 | 0.565 |
52DAP/47DAP | 0.83112 | 0.565 |
57DAP/52DAP | 1.49634 | 0.348 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07636 | 0.685 |
17DAP/reference | 0.91308 | 0.278 |
27DAP/reference | 1.06546 | 0.587 |
39DAP/reference | 1.07244 | 0.486 |
41DAP/reference | 0.86055 | 0.085 |
42DAP/reference | 1.04258 | 0.366 |
43DAP/reference | 1.1436 | 0.078 |
47DAP/reference | 1.40474 | 0.001 |
52DAP/reference | 1.14779 | 0.167 |
57DAP/reference | 1.26538 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0914 | 0.508 |
27DAP/17DAP | 1.00653 | 1 |
39DAP/27DAP | 1.22245 | 0.091 |
41DAP/39DAP | 0.89064 | 0.434 |
42DAP/41DAP | 1.15743 | 0.2 |
43DAP/42DAP | 0.91984 | 0.197 |
47DAP/43DAP | 1.11063 | 0.339 |
52DAP/47DAP | 1.07589 | 0.835 |
57DAP/52DAP | 0.72213 | 0.189 |
57DAP/7DAP | 0.78914 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40103 | 0.043 |
17DAP/reference | 0.95848 | 0.338 |
27DAP/reference | 0.84055 | 0.071 |
39DAP/reference | 0.89285 | 0.073 |
41DAP/reference | 0.87479 | 0.09 |
42DAP/reference | 0.88567 | 0.117 |
43DAP/reference | 0.96811 | 0.421 |
47DAP/reference | 1.24022 | 0.065 |
52DAP/reference | 0.9167 | 0.163 |
57DAP/reference | 0.98672 | 0.569 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87207 | 0.087 |
17DAP/reference | 0.87235 | 0.072 |
27DAP/reference | 0.94357 | 0.34 |
39DAP/reference | 0.86544 | 0.038 |
41DAP/reference | 0.82887 | 0.044 |
42DAP/reference | 1.00083 | 0.723 |
43DAP/reference | 0.80836 | 0.105 |
47DAP/reference | 0.96203 | 0.368 |
52DAP/reference | 0.77026 | 0.01 |
57DAP/reference | 0.8155 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11946 | 0.146 |
17DAP/reference | 0.78752 | 0.054 |
27DAP/reference | 0.86562 | 0.065 |
39DAP/reference | 0.94748 | 0.199 |
41DAP/reference | 0.84081 | 0.046 |
42DAP/reference | 0.9166 | 0.361 |
43DAP/reference | 1.10242 | 0.439 |
47DAP/reference | 0.94133 | 0.286 |
52DAP/reference | 1.15315 | 0.457 |
57DAP/reference | 1.38189 | 0.023 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03244 | 1 |
26DAP/20DAP | 1.05443 | 1 |
34DAP/26DAP | 0.97102 | 0.927 |
51DAP/34DAP | 2.85956 | 0.033 |
52DAP/51DAP | 1.0531 | 0.888 |
53DAP/52DAP | 0.88751 | 0.386 |
55DAP/53DAP | 0.52535 | 0.017 |
57DAP/55DAP | 1.46846 | 0.203 |
62DAP/57DAP | 1.09451 | 0.935 |
68DAP/62DAP | 1.39494 | 0.202 |
68DAP/14DAP | 2.5074 | 0.018 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.77126 | 0.186 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72403 | 0.213 |
Mature Green Tomato/Ripe Tomato | 0.81019 | 0.317 |
Immature Eggplant/Mature Eggplant | 1.60114 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.78876 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.83433 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.69874 | 0.605 |
1-1-2/M82 | 1.18209 | 1 |
12-2/M82 | 0.65457 | |
12-4/M82 | 1.19535 | 1 |
1-3/M82 | 1.73674 | 0.479 |
2-1-1/M82 | 0.87828 | 0.465 |
2-1/M82 | 0.69928 | 0.345 |
2-6/M82 | 0.78838 | 0.501 |
3-2/M82 | 0.61266 | 0.752 |
4-1-1/M82 | 0.80472 | 1 |
4-1/M82 | 0.72363 | |
4-3-2/M82 | 1.86298 | 0.508 |
4-3/M82 | 1.12948 | 1 |
5-3/M82 | 1.31406 | 0.572 |
6-2/M82 | 0.88166 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.08433 | 1 |
7-2/M82 | 1.10201 | 1 |
9-3-2/M82 | 1.71966 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.25083 | 0.277 |
IL2-6/WTpooled | 1.06244 | 0.659 |
IL7-5/WTpooled | 1.05859 | 0.792 |
IL7-3/WTpooled | 1.07458 | 1 |
IL12-4/WTpooled | 1.06529 | 0.646 |
IL1-4/WTpooled | 0.92777 | 0.562 |
WT/WTpooled | 1.03179 | 0.957 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19925 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06287 | 0.921 |
DC3000/delta hrp 6h | 0.92931 | 0.95 |
DC3000/delta hrp 12h | 0.90862 | 1 |
DC3000/delta hrp 24h | 1.26245 | 0.067 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.00314 | 1 |
DC3000 delta B/DC3000 delta AB | 0.94361 | 0.431 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01548 | 1 |
Var 0h | 0.53641 | 0.325 |
Var 12h I row2-row1 | 1.06906 | 0.795 |
Var 12h NI row2-row1 | 1.0539 | 1 |
Var 36h I row2-row1 | 0.9506 | 1 |
Var 36h NI row2-row1 | 1.05731 | 0.253 |
Var 60h I row2-row1 | 0.75305 | 0.582 |
Var 60h NI row2-row1 | 1.06126 | 1 |
Time course 0hI-0hNI | 0.96606 | 0.799 |
Time course 12hI-12hNI | 1.05421 | 0.678 |
Time course 36hI-36hNI | 1.05679 | 0.401 |
Time course 60hI-60hNI | 0.83431 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85619 | 0.306 |
transgenic ySAMdc/azygous control (breaker) | 0.75078 | 0.137 |
transgenic ySAMdc/azygous control (red) | 0.94525 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.57496 | 0.04 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8981 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93094 | 1 |
Manapal/WT (break) | 0.9858 | 1 |
Manapal/WT (red) | 1.52007 | 0.222 |
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