Expression of 1-1-6.4.7.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.906940.511
27DAP/17DAP1.068251
39DAP/27DAP1.275010.708
41DAP/39DAP0.827810.416
42DAP/41DAP1.764830.207
43DAP/42DAP1.222060.768
47DAP/43DAP0.877710.565
52DAP/47DAP0.831120.565
57DAP/52DAP1.496340.348

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.076360.685
17DAP/reference0.913080.278
27DAP/reference1.065460.587
39DAP/reference1.072440.486
41DAP/reference0.860550.085
42DAP/reference1.042580.366
43DAP/reference1.14360.078
47DAP/reference1.404740.001
52DAP/reference1.147790.167
57DAP/reference1.265380.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.09140.508
27DAP/17DAP1.006531
39DAP/27DAP1.222450.091
41DAP/39DAP0.890640.434
42DAP/41DAP1.157430.2
43DAP/42DAP0.919840.197
47DAP/43DAP1.110630.339
52DAP/47DAP1.075890.835
57DAP/52DAP0.722130.189
57DAP/7DAP0.789141

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.401030.043
17DAP/reference0.958480.338
27DAP/reference0.840550.071
39DAP/reference0.892850.073
41DAP/reference0.874790.09
42DAP/reference0.885670.117
43DAP/reference0.968110.421
47DAP/reference1.240220.065
52DAP/reference0.91670.163
57DAP/reference0.986720.569

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.872070.087
17DAP/reference0.872350.072
27DAP/reference0.943570.34
39DAP/reference0.865440.038
41DAP/reference0.828870.044
42DAP/reference1.000830.723
43DAP/reference0.808360.105
47DAP/reference0.962030.368
52DAP/reference0.770260.01
57DAP/reference0.81550.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.119460.146
17DAP/reference0.787520.054
27DAP/reference0.865620.065
39DAP/reference0.947480.199
41DAP/reference0.840810.046
42DAP/reference0.91660.361
43DAP/reference1.102420.439
47DAP/reference0.941330.286
52DAP/reference1.153150.457
57DAP/reference1.381890.023

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.032441
26DAP/20DAP1.054431
34DAP/26DAP0.971020.927
51DAP/34DAP2.859560.033
52DAP/51DAP1.05310.888
53DAP/52DAP0.887510.386
55DAP/53DAP0.525350.017
57DAP/55DAP1.468460.203
62DAP/57DAP1.094510.935
68DAP/62DAP1.394940.202
68DAP/14DAP2.50740.018

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.771260.186

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.724030.213
Mature Green Tomato/Ripe Tomato0.810190.317
Immature Eggplant/Mature Eggplant1.601140.05
Ripe Pepper/Ripe Tomato2.788760.258
Mature Eggplant/Ripe Tomato0.834330.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.698740.605
1-1-2/M821.182091
12-2/M820.65457
12-4/M821.195351
1-3/M821.736740.479
2-1-1/M820.878280.465
2-1/M820.699280.345
2-6/M820.788380.501
3-2/M820.612660.752
4-1-1/M820.804721
4-1/M820.72363
4-3-2/M821.862980.508
4-3/M821.129481
5-3/M821.314060.572
6-2/M820.88166
6-3/M82N/AN/A
7-1/M821.084331
7-2/M821.102011
9-3-2/M821.719661

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.250830.277
IL2-6/WTpooled1.062440.659
IL7-5/WTpooled1.058590.792
IL7-3/WTpooled1.074581
IL12-4/WTpooled1.065290.646
IL1-4/WTpooled0.927770.562
WT/WTpooled1.031790.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.199251

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.062870.921
DC3000/delta hrp 6h0.929310.95
DC3000/delta hrp 12h0.908621
DC3000/delta hrp 24h1.262450.067

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.003141
DC3000 delta B/DC3000 delta AB0.943610.431

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015481
Var 0h0.536410.325
Var 12h I row2-row11.069060.795
Var 12h NI row2-row11.05391
Var 36h I row2-row10.95061
Var 36h NI row2-row11.057310.253
Var 60h I row2-row10.753050.582
Var 60h NI row2-row11.061261
Time course 0hI-0hNI0.966060.799
Time course 12hI-12hNI1.054210.678
Time course 36hI-36hNI1.056790.401
Time course 60hI-60hNI0.834310.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.856190.306
transgenic ySAMdc/azygous control (breaker)0.750780.137
transgenic ySAMdc/azygous control (red)0.945251

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.574960.04

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.89810.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.930941
Manapal/WT (break)0.98581
Manapal/WT (red)1.520070.222