Expression of 1-1-6.4.8.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14516 | 0.863 |
27DAP/17DAP | 1.29382 | 0.791 |
39DAP/27DAP | 0.80711 | 0.402 |
41DAP/39DAP | 1.33628 | 0.129 |
42DAP/41DAP | 2.66679 | 0.059 |
43DAP/42DAP | 1.15404 | 0.867 |
47DAP/43DAP | 0.90464 | 0.671 |
52DAP/47DAP | 0.92517 | 0.736 |
57DAP/52DAP | 0.9699 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92928 | 0.048 |
17DAP/reference | 0.98365 | 0.664 |
27DAP/reference | 0.98736 | 0.654 |
39DAP/reference | 1.08208 | 0.445 |
41DAP/reference | 0.89088 | 0.154 |
42DAP/reference | 0.86939 | 0.01 |
43DAP/reference | 0.97721 | 0.675 |
47DAP/reference | 0.92547 | 0.046 |
52DAP/reference | 0.79309 | 0.069 |
57DAP/reference | 0.88104 | 0.035 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89743 | 0.238 |
27DAP/17DAP | 1.00265 | 1 |
39DAP/27DAP | 1.1331 | 0.259 |
41DAP/39DAP | 0.97844 | 0.986 |
42DAP/41DAP | 1.02926 | 0.893 |
43DAP/42DAP | 1.09331 | 0.079 |
47DAP/43DAP | 1.03029 | 0.765 |
52DAP/47DAP | 1.05329 | 0.785 |
57DAP/52DAP | 1.05623 | 0.722 |
57DAP/7DAP | 1.1802 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80137 | |
17DAP/reference | 0.93692 | 0.044 |
27DAP/reference | 0.85661 | 0.011 |
39DAP/reference | 0.99553 | |
41DAP/reference | 0.86185 | 0.038 |
42DAP/reference | N/A | N/A |
43DAP/reference | 0.82499 | 0.056 |
47DAP/reference | 0.86055 | 0.057 |
52DAP/reference | 0.89809 | 0.022 |
57DAP/reference | 0.82213 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00204 | 0.993 |
17DAP/reference | 0.93714 | 0.201 |
27DAP/reference | 1.00804 | 1 |
39DAP/reference | 0.86305 | 0.085 |
41DAP/reference | 0.83619 | 0.054 |
42DAP/reference | 0.85577 | 0.014 |
43DAP/reference | 1.00894 | 1 |
47DAP/reference | 0.91305 | 0.015 |
52DAP/reference | 0.91585 | 0.093 |
57DAP/reference | 0.96762 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93491 | 0.035 |
17DAP/reference | 0.96154 | 0.275 |
27DAP/reference | 0.98724 | 0.516 |
39DAP/reference | 0.94241 | 0.058 |
41DAP/reference | 0.95049 | 0.237 |
42DAP/reference | 0.80899 | 0.041 |
43DAP/reference | 0.88856 | 0.206 |
47DAP/reference | 0.91026 | 0.161 |
52DAP/reference | 0.8686 | 0.186 |
57DAP/reference | 0.72974 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95131 | 1 |
26DAP/20DAP | 0.89224 | 0.512 |
34DAP/26DAP | 1.14153 | 0.819 |
51DAP/34DAP | 0.94727 | 0.649 |
52DAP/51DAP | 1.0478 | 0.565 |
53DAP/52DAP | 0.99869 | 1 |
55DAP/53DAP | 1.07 | 0.468 |
57DAP/55DAP | 1.08322 | 0.826 |
62DAP/57DAP | 1.10311 | 0.8 |
68DAP/62DAP | 0.89511 | 0.609 |
68DAP/14DAP | 0.89007 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.17538 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.62753 | |
Mature Green Tomato/Ripe Tomato | 0.46071 | 0.025 |
Immature Eggplant/Mature Eggplant | 0.62892 | |
Ripe Pepper/Ripe Tomato | 0.3451 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.64035 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10017 | 0.877 |
1-1-2/M82 | 1.10938 | 1 |
12-2/M82 | 0.96736 | 0.955 |
12-4/M82 | 1.23808 | 1 |
1-3/M82 | 0.95382 | 0.441 |
2-1-1/M82 | 1.30109 | 0.422 |
2-1/M82 | 0.49412 | |
2-6/M82 | 0.96606 | 1 |
3-2/M82 | 1.05913 | 0.84 |
4-1-1/M82 | 1.00213 | 1 |
4-1/M82 | 1.14783 | 1 |
4-3-2/M82 | 1.24731 | 0.508 |
4-3/M82 | 0.96327 | 1 |
5-3/M82 | 0.99672 | 1 |
6-2/M82 | 1.09975 | |
6-3/M82 | 1.00235 | 1 |
7-1/M82 | 1.03214 | 1 |
7-2/M82 | 0.97577 | 0.486 |
9-3-2/M82 | 1.57759 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.26987 | |
IL2-6/WTpooled | 1.16311 | 0.584 |
IL7-5/WTpooled | 0.86814 | 1 |
IL7-3/WTpooled | 1.0427 | 1 |
IL12-4/WTpooled | 0.91381 | 0.71 |
IL1-4/WTpooled | 1.16387 | 1 |
WT/WTpooled | 0.93144 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.35991 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99359 | 1 |
DC3000/delta hrp 6h | 0.90081 | 0.95 |
DC3000/delta hrp 12h | 0.94978 | 1 |
DC3000/delta hrp 24h | 1.09864 | 0.271 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06612 | 0.384 |
DC3000 delta B/DC3000 delta AB | 1.0581 | 0.51 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99781 | 1 |
Exp 36h | 1.11233 | 1 |
Exp 60h | 0.99586 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01621 | 1 |
Var 0h | 0.48059 | 1 |
Var 12h I row2-row1 | 1.18245 | 0.506 |
Var 12h NI row2-row1 | 0.96535 | 0.906 |
Var 36h I row2-row1 | 1.12405 | 1 |
Var 36h NI row2-row1 | 0.93123 | 0.61 |
Var 60h I row2-row1 | 1.18719 | 1 |
Var 60h NI row2-row1 | 1.24118 | 0.904 |
Time course 0hI-0hNI | 1.14948 | 0.574 |
Time course 12hI-12hNI | 1.04683 | 0.777 |
Time course 36hI-36hNI | 1.04678 | 0.513 |
Time course 60hI-60hNI | 1.41867 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01931 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 0.81468 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.8646 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97628 | 0.168 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.6966 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.60748 | 0.172 |
Manapal/WT (break) | 1.23006 | 1 |
Manapal/WT (red) | 1.00825 | 1 |
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