Expression of 1-1-6.4.9.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13992 | 0.561 |
27DAP/17DAP | 1.29437 | 0.742 |
39DAP/27DAP | 1.03407 | 0.899 |
41DAP/39DAP | 1.03261 | 0.938 |
42DAP/41DAP | 0.87498 | 1 |
43DAP/42DAP | 1.05195 | 1 |
47DAP/43DAP | 1.19464 | 0.285 |
52DAP/47DAP | 0.96979 | 0.903 |
57DAP/52DAP | 1.11756 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01819 | 0.96 |
17DAP/reference | 1.03462 | 0.031 |
27DAP/reference | 1.00617 | 0.909 |
39DAP/reference | 1.03201 | 0.654 |
41DAP/reference | 1.02553 | 0.587 |
42DAP/reference | 0.95316 | 0.163 |
43DAP/reference | 0.98601 | 0.728 |
47DAP/reference | 0.98135 | 0.418 |
52DAP/reference | 0.88639 | 0.158 |
57DAP/reference | 0.82397 | 0.025 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05522 | 0.687 |
27DAP/17DAP | 1.02144 | 0.942 |
39DAP/27DAP | 0.98201 | 0.859 |
41DAP/39DAP | 1.05204 | 0.705 |
42DAP/41DAP | 0.9892 | 0.869 |
43DAP/42DAP | 0.98815 | 0.902 |
47DAP/43DAP | 0.97254 | 0.896 |
52DAP/47DAP | 0.98348 | 0.959 |
57DAP/52DAP | 1.02548 | 0.925 |
57DAP/7DAP | 0.98667 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08783 | 0.545 |
17DAP/reference | 1.11991 | 0.688 |
27DAP/reference | 1.02286 | 0.8 |
39DAP/reference | 1.24278 | 0.12 |
41DAP/reference | 0.98782 | 0.512 |
42DAP/reference | 1.01369 | 0.713 |
43DAP/reference | 1.12967 | 0.307 |
47DAP/reference | 1.00289 | 1 |
52DAP/reference | 1.0474 | 1 |
57DAP/reference | 1.1402 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02981 | 0.531 |
17DAP/reference | 1.04527 | 0.448 |
27DAP/reference | 0.90732 | 0.22 |
39DAP/reference | 1.04464 | 0.868 |
41DAP/reference | 0.97072 | 0.384 |
42DAP/reference | 0.99927 | 0.723 |
43DAP/reference | 0.95041 | 0.438 |
47DAP/reference | 0.94 | 0.094 |
52DAP/reference | 1.01335 | 0.938 |
57DAP/reference | 1.16028 | 0.119 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31938 | 0.086 |
17DAP/reference | 1.01248 | 0.977 |
27DAP/reference | 0.92211 | |
39DAP/reference | 1.48734 | 0.182 |
41DAP/reference | 1.50611 | 0.357 |
42DAP/reference | 0.91752 | 0.552 |
43DAP/reference | 0.72007 | 0.095 |
47DAP/reference | 0.99434 | 0.667 |
52DAP/reference | 0.88906 | 0.424 |
57DAP/reference | 0.76435 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03255 | 0.966 |
26DAP/20DAP | 0.96647 | 1 |
34DAP/26DAP | 1.0032 | 1 |
51DAP/34DAP | 0.96838 | 0.743 |
52DAP/51DAP | 0.95199 | 1 |
53DAP/52DAP | 0.95733 | 0.703 |
55DAP/53DAP | 0.80995 | 0.055 |
57DAP/55DAP | 1.03086 | 0.935 |
62DAP/57DAP | 0.95021 | 0.28 |
68DAP/62DAP | 1.13384 | 0.573 |
68DAP/14DAP | 0.96885 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94557 | 0.137 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.32307 | 0.287 |
Mature Green Tomato/Ripe Tomato | 0.73377 | 0.119 |
Immature Eggplant/Mature Eggplant | 1.14366 | 0.348 |
Ripe Pepper/Ripe Tomato | 1.21993 | 1 |
Mature Eggplant/Ripe Tomato | 0.40791 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96381 | 0.944 |
1-1-2/M82 | 1.48517 | 1 |
12-2/M82 | 0.99055 | 1 |
12-4/M82 | 0.90598 | 1 |
1-3/M82 | 0.95347 | 0.378 |
2-1-1/M82 | 0.92109 | 0.784 |
2-1/M82 | 1.30548 | |
2-6/M82 | 0.99012 | 1 |
3-2/M82 | 0.88714 | 1 |
4-1-1/M82 | 0.84786 | 1 |
4-1/M82 | 0.81147 | 0.665 |
4-3-2/M82 | 0.71778 | 0.445 |
4-3/M82 | 1.15603 | 1 |
5-3/M82 | 1.02076 | 0.572 |
6-2/M82 | 0.98439 | 1 |
6-3/M82 | 1.01067 | 1 |
7-1/M82 | 0.93543 | 1 |
7-2/M82 | 0.97861 | 0.881 |
9-3-2/M82 | 0.82489 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.66153 | 0.247 |
IL2-6/WTpooled | 1.19881 | 0.584 |
IL7-5/WTpooled | 0.99508 | 1 |
IL7-3/WTpooled | 0.77651 | 0.293 |
IL12-4/WTpooled | 1.14483 | 0.595 |
IL1-4/WTpooled | 0.46988 | 0.422 |
WT/WTpooled | 1.00761 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02082 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02928 | 0.921 |
DC3000/delta hrp 6h | 1.30575 | 1 |
DC3000/delta hrp 12h | 0.86983 | 1 |
DC3000/delta hrp 24h | 0.97488 | 0.875 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19559 | 0.06 |
DC3000 delta B/DC3000 delta AB | 1.05162 | 0.477 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87398 | 1 |
Exp 36h | 1.16338 | 0.693 |
Exp 60h | 1.18412 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02513 | 1 |
Var 0h | 0.97634 | 1 |
Var 12h I row2-row1 | 1.0984 | 0.654 |
Var 12h NI row2-row1 | 1.38817 | 1 |
Var 36h I row2-row1 | 0.94929 | 1 |
Var 36h NI row2-row1 | 0.83779 | 0.645 |
Var 60h I row2-row1 | 1.08984 | 1 |
Var 60h NI row2-row1 | 1.1871 | 0.904 |
Time course 0hI-0hNI | 1.0834 | 0.603 |
Time course 12hI-12hNI | 0.96102 | 0.738 |
Time course 36hI-36hNI | 1.0553 | 0.453 |
Time course 60hI-60hNI | 1.30107 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99809 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.31904 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.05992 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03961 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06965 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86707 | 1 |
Manapal/WT (break) | 0.91843 | 1 |
Manapal/WT (red) | 1.09526 | 0.413 |
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