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Expression of 1-1-6.4.9.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986830.823
27DAP/17DAP1.127890.864
39DAP/27DAP1.562440.053
41DAP/39DAP0.8980.617
42DAP/41DAP1.08520.941
43DAP/42DAP1.171340.835
47DAP/43DAP0.909480.687
52DAP/47DAP0.915780.702
57DAP/52DAP1.075830.96

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.021180.844
17DAP/reference0.872380.104
27DAP/reference0.941470.484
39DAP/reference0.922380.306
41DAP/reference0.75490.049
42DAP/reference1.374140.001
43DAP/reference1.150650.126
47DAP/reference1.461620.003
52DAP/reference1.0040.73
57DAP/reference1.110740.105

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.722310.072
27DAP/17DAP1.132650.724
39DAP/27DAP1.036370.77
41DAP/39DAP1.074490.868
42DAP/41DAP1.101880.539
43DAP/42DAP1.230160.045
47DAP/43DAP0.97560.886
52DAP/47DAP0.914960.702
57DAP/52DAP0.863990.445
57DAP/7DAP0.696161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.267480.041
17DAP/reference0.978620.447
27DAP/reference1.218570.16
39DAP/reference1.06710.198
41DAP/reference1.024740.949
42DAP/reference1.286860.013
43DAP/reference1.285020.032
47DAP/reference1.368760.027
52DAP/reference1.298980.011
57DAP/reference1.280890.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028660.831
17DAP/reference1.005250.728
27DAP/reference0.884250.129
39DAP/reference1.058920.746
41DAP/reference0.817210.007
42DAP/reference0.989360.482
43DAP/reference0.981620.633
47DAP/reference1.158790.153
52DAP/reference0.875630.066
57DAP/reference0.8930.208

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.107640.602
17DAP/reference1.04020.689
27DAP/reference0.848530.036
39DAP/reference0.98430.591
41DAP/reference0.896780.167
42DAP/reference1.177340.171
43DAP/reference1.316960.154
47DAP/reference1.247770.03
52DAP/reference1.283850.115
57DAP/reference1.091820.491

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.008621
26DAP/20DAP0.851590.183
34DAP/26DAP1.239911
51DAP/34DAP1.047770.898
52DAP/51DAP1.002021
53DAP/52DAP1.233020.819
55DAP/53DAP0.92470.675
57DAP/55DAP1.181770.51
62DAP/57DAP1.034761
68DAP/62DAP0.778310.543
68DAP/14DAP1.349270.436

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.823240.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.979010.783
Mature Green Tomato/Ripe Tomato0.855870.047
Immature Eggplant/Mature Eggplant1.067860.554
Ripe Pepper/Ripe Tomato1.319721
Mature Eggplant/Ripe Tomato0.4080.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.073320.877
1-1-2/M821.154151
12-2/M820.829940.955
12-4/M821.103421
1-3/M821.451280.248
2-1-1/M821.002721
2-1/M820.745990.322
2-6/M821.502240.505
3-2/M821.241470.717
4-1-1/M821.14871
4-1/M821.78408N/A
4-3-2/M821.802090.241
4-3/M821.208381
5-3/M821.215191
6-2/M821.121241
6-3/M820.72005N/A
7-1/M820.80980.803
7-2/M821.466631
9-3-2/M821.74408N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.862350.247
IL2-6/WTpooled1.026351
IL7-5/WTpooled0.929321
IL7-3/WTpooled0.858640.293
IL12-4/WTpooled0.99311
IL1-4/WTpooled1.060821
WT/WTpooled0.997451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.99541

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985441
DC3000/delta hrp 6h0.956050.95
DC3000/delta hrp 12h1.002271
DC3000/delta hrp 24h0.846180.107

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.896010.297

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.985361
Exp 36h1.027860.943
Exp 60h0.874440.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03241
Var 0h1.072690.936
Var 12h I row2-row10.709440.344
Var 12h NI row2-row10.980480.82
Var 36h I row2-row10.871211
Var 36h NI row2-row11.410250.482
Var 60h I row2-row11.038331
Var 60h NI row2-row10.949941
Time course 0hI-0hNI1.03020.867
Time course 12hI-12hNI0.913070.295
Time course 36hI-36hNI0.834990.034
Time course 60hI-60hNI0.420410.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.036590.511
transgenic ySAMdc/azygous control (breaker)1.256151
transgenic ySAMdc/azygous control (red)1.121050.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000530.967

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.804780.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.103780.307
Manapal/WT (break)1.161840.381
Manapal/WT (red)1.347840.164