Expression of 1-1-6.4.9.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98683 | 0.823 |
27DAP/17DAP | 1.12789 | 0.864 |
39DAP/27DAP | 1.56244 | 0.053 |
41DAP/39DAP | 0.898 | 0.617 |
42DAP/41DAP | 1.0852 | 0.941 |
43DAP/42DAP | 1.17134 | 0.835 |
47DAP/43DAP | 0.90948 | 0.687 |
52DAP/47DAP | 0.91578 | 0.702 |
57DAP/52DAP | 1.07583 | 0.96 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02118 | 0.844 |
17DAP/reference | 0.87238 | 0.104 |
27DAP/reference | 0.94147 | 0.484 |
39DAP/reference | 0.92238 | 0.306 |
41DAP/reference | 0.7549 | 0.049 |
42DAP/reference | 1.37414 | 0.001 |
43DAP/reference | 1.15065 | 0.126 |
47DAP/reference | 1.46162 | 0.003 |
52DAP/reference | 1.004 | 0.73 |
57DAP/reference | 1.11074 | 0.105 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.72231 | 0.072 |
27DAP/17DAP | 1.13265 | 0.724 |
39DAP/27DAP | 1.03637 | 0.77 |
41DAP/39DAP | 1.07449 | 0.868 |
42DAP/41DAP | 1.10188 | 0.539 |
43DAP/42DAP | 1.23016 | 0.045 |
47DAP/43DAP | 0.9756 | 0.886 |
52DAP/47DAP | 0.91496 | 0.702 |
57DAP/52DAP | 0.86399 | 0.445 |
57DAP/7DAP | 0.69616 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26748 | 0.041 |
17DAP/reference | 0.97862 | 0.447 |
27DAP/reference | 1.21857 | 0.16 |
39DAP/reference | 1.0671 | 0.198 |
41DAP/reference | 1.02474 | 0.949 |
42DAP/reference | 1.28686 | 0.013 |
43DAP/reference | 1.28502 | 0.032 |
47DAP/reference | 1.36876 | 0.027 |
52DAP/reference | 1.29898 | 0.011 |
57DAP/reference | 1.28089 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02866 | 0.831 |
17DAP/reference | 1.00525 | 0.728 |
27DAP/reference | 0.88425 | 0.129 |
39DAP/reference | 1.05892 | 0.746 |
41DAP/reference | 0.81721 | 0.007 |
42DAP/reference | 0.98936 | 0.482 |
43DAP/reference | 0.98162 | 0.633 |
47DAP/reference | 1.15879 | 0.153 |
52DAP/reference | 0.87563 | 0.066 |
57DAP/reference | 0.893 | 0.208 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10764 | 0.602 |
17DAP/reference | 1.0402 | 0.689 |
27DAP/reference | 0.84853 | 0.036 |
39DAP/reference | 0.9843 | 0.591 |
41DAP/reference | 0.89678 | 0.167 |
42DAP/reference | 1.17734 | 0.171 |
43DAP/reference | 1.31696 | 0.154 |
47DAP/reference | 1.24777 | 0.03 |
52DAP/reference | 1.28385 | 0.115 |
57DAP/reference | 1.09182 | 0.491 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00862 | 1 |
26DAP/20DAP | 0.85159 | 0.183 |
34DAP/26DAP | 1.23991 | 1 |
51DAP/34DAP | 1.04777 | 0.898 |
52DAP/51DAP | 1.00202 | 1 |
53DAP/52DAP | 1.23302 | 0.819 |
55DAP/53DAP | 0.9247 | 0.675 |
57DAP/55DAP | 1.18177 | 0.51 |
62DAP/57DAP | 1.03476 | 1 |
68DAP/62DAP | 0.77831 | 0.543 |
68DAP/14DAP | 1.34927 | 0.436 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.82324 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.97901 | 0.783 |
Mature Green Tomato/Ripe Tomato | 0.85587 | 0.047 |
Immature Eggplant/Mature Eggplant | 1.06786 | 0.554 |
Ripe Pepper/Ripe Tomato | 1.31972 | 1 |
Mature Eggplant/Ripe Tomato | 0.408 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07332 | 0.877 |
1-1-2/M82 | 1.15415 | 1 |
12-2/M82 | 0.82994 | 0.955 |
12-4/M82 | 1.10342 | 1 |
1-3/M82 | 1.45128 | 0.248 |
2-1-1/M82 | 1.00272 | 1 |
2-1/M82 | 0.74599 | 0.322 |
2-6/M82 | 1.50224 | 0.505 |
3-2/M82 | 1.24147 | 0.717 |
4-1-1/M82 | 1.1487 | 1 |
4-1/M82 | 1.78408 | |
4-3-2/M82 | 1.80209 | 0.241 |
4-3/M82 | 1.20838 | 1 |
5-3/M82 | 1.21519 | 1 |
6-2/M82 | 1.12124 | 1 |
6-3/M82 | 0.72005 | |
7-1/M82 | 0.8098 | 0.803 |
7-2/M82 | 1.46663 | 1 |
9-3-2/M82 | 1.74408 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86235 | 0.247 |
IL2-6/WTpooled | 1.02635 | 1 |
IL7-5/WTpooled | 0.92932 | 1 |
IL7-3/WTpooled | 0.85864 | 0.293 |
IL12-4/WTpooled | 0.9931 | 1 |
IL1-4/WTpooled | 1.06082 | 1 |
WT/WTpooled | 0.99745 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9954 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98544 | 1 |
DC3000/delta hrp 6h | 0.95605 | 0.95 |
DC3000/delta hrp 12h | 1.00227 | 1 |
DC3000/delta hrp 24h | 0.84618 | 0.107 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.89601 | 0.297 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98536 | 1 |
Exp 36h | 1.02786 | 0.943 |
Exp 60h | 0.87444 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0324 | 1 |
Var 0h | 1.07269 | 0.936 |
Var 12h I row2-row1 | 0.70944 | 0.344 |
Var 12h NI row2-row1 | 0.98048 | 0.82 |
Var 36h I row2-row1 | 0.87121 | 1 |
Var 36h NI row2-row1 | 1.41025 | 0.482 |
Var 60h I row2-row1 | 1.03833 | 1 |
Var 60h NI row2-row1 | 0.94994 | 1 |
Time course 0hI-0hNI | 1.0302 | 0.867 |
Time course 12hI-12hNI | 0.91307 | 0.295 |
Time course 36hI-36hNI | 0.83499 | 0.034 |
Time course 60hI-60hNI | 0.42041 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03659 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.25615 | 1 |
transgenic ySAMdc/azygous control (red) | 1.12105 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00053 | 0.967 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.80478 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10378 | 0.307 |
Manapal/WT (break) | 1.16184 | 0.381 |
Manapal/WT (red) | 1.34784 | 0.164 |
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