Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.1.1.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.94977	0.059
27DAP/17DAP	1.2334	0.959
39DAP/27DAP	4.88385	0.318
41DAP/39DAP	0.93312	0.678
42DAP/41DAP	1.16815	0.941
43DAP/42DAP	1.13051	1
47DAP/43DAP	0.98734	0.868
52DAP/47DAP	1.03377	0.845
57DAP/52DAP	2.16487	0.776

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.36321	0.029
17DAP/reference	0.89591	0.597
27DAP/reference	1.58265	0.073
39DAP/reference	1.18868
41DAP/reference	1.26896	0.365
42DAP/reference	1.25652	0.011
43DAP/reference	0.3312
47DAP/reference	1.31227	0.014
52DAP/reference	N/A	N/A
57DAP/reference	2.69736

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.94698	0.732
27DAP/17DAP	0.5602	0.748
39DAP/27DAP	3.56476
41DAP/39DAP	1.10374	0.799
42DAP/41DAP	1.52906	0.401
43DAP/42DAP	0.38628	0.022
47DAP/43DAP	0.82561	0.402
52DAP/47DAP	2.2416	0.089
57DAP/52DAP	2.11238
57DAP/7DAP	0.72797

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.8787	0.054
17DAP/reference	0.78688	0.017
27DAP/reference	0.84268	0.011
39DAP/reference	0.78804	0.011
41DAP/reference	0.75152	0.016
42DAP/reference	0.86359	0.095
43DAP/reference	0.67553	0.011
47DAP/reference	0.78074	0.168
52DAP/reference	0.6845	0.019
57DAP/reference	0.64491	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.6806	0.475
17DAP/reference	1.06328	0.561
27DAP/reference	N/A	N/A
39DAP/reference	1.30215	0.324
41DAP/reference	0.88148	0.493
42DAP/reference	2.00296	0.509
43DAP/reference	1.41115	0.033
47DAP/reference	1.38172	0.008
52DAP/reference	1.35069	0.098
57DAP/reference	1.55904	0.296

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.82643	0.061
17DAP/reference	0.86567	0.328
27DAP/reference	0.7521	0.02
39DAP/reference	0.67746	0.007
41DAP/reference	0.81858	0.024
42DAP/reference	0.77224	0.036
43DAP/reference	0.67488	0.016
47DAP/reference	1.69926
52DAP/reference	0.61482	0.057
57DAP/reference	0.45179

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.99038	1
26DAP/20DAP	0.33294
34DAP/26DAP	1.68383	1
51DAP/34DAP	0.80776	0.522
52DAP/51DAP	0.3149
53DAP/52DAP	1.19757	0.83
55DAP/53DAP	0.99248	0.908
57DAP/55DAP	0.64065
62DAP/57DAP	N/A	N/A
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.65512	0.186

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.74496	0.321
IL2-6/WTpooled	1.19956	1
IL7-5/WTpooled	1.14476	1
IL7-3/WTpooled	0.83362	1
IL12-4/WTpooled	0.89968	1
IL1-4/WTpooled	0.89234	0.699
WT/WTpooled	0.86697

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	2.4475	0.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.84449	0.333
Manapal/WT (red)	N/A	N/A