Expression of 1-1-7.1.10.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.971790.779
27DAP/17DAP1.150510.845
39DAP/27DAP1.24240.28
41DAP/39DAP1.109180.642
42DAP/41DAP1.295980.404
43DAP/42DAP1.080441
47DAP/43DAP0.739190.251
52DAP/47DAP1.188270.69
57DAP/52DAP0.978340.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.012391
17DAP/reference0.982430.63
27DAP/reference0.95540.17
39DAP/reference0.963140.487
41DAP/reference0.964230.542
42DAP/reference0.947950.035
43DAP/reference1.015740.812
47DAP/reference0.989080.503
52DAP/reference0.99510.689
57DAP/reference0.963940.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.13780.172
27DAP/17DAP1.154530.573
39DAP/27DAP1.102470.663
41DAP/39DAP1.28130.612
42DAP/41DAP1.171880.947
43DAP/42DAP1.026951
47DAP/43DAP1.95510.022
52DAP/47DAP0.905850.901
57DAP/52DAP1.616730.064
57DAP/7DAP4.690940.22

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.932710.138
17DAP/reference0.960960.22
27DAP/reference0.909920.082
39DAP/reference0.968860.474
41DAP/reference1.018660.864
42DAP/reference1.053350.405
43DAP/reference0.962850.21
47DAP/reference0.968330.504
52DAP/reference0.939580.053
57DAP/reference0.995920.67

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.986560.77
17DAP/reference1.021250.941
27DAP/reference0.940120.212
39DAP/reference0.994170.621
41DAP/reference0.95180.212
42DAP/reference0.920720.089
43DAP/reference1.072830.411
47DAP/reference0.922030.137
52DAP/reference1.057520.145
57DAP/reference1.023070.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.955940.169
17DAP/reference1.000530.918
27DAP/reference1.044150.695
39DAP/reference0.988310.591
41DAP/reference0.926960.086
42DAP/reference0.861810.017
43DAP/reference0.923970.179
47DAP/reference0.898630.199
52DAP/reference0.883250.256
57DAP/reference0.807260.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.929410.787
26DAP/20DAP1.192720.499
34DAP/26DAP0.811660.2
51DAP/34DAP1.159260.637
52DAP/51DAP0.974681
53DAP/52DAP1.620290.077
55DAP/53DAP1.98190.048
57DAP/55DAP1.734330.474
62DAP/57DAP0.625950.007
68DAP/62DAP1.067720.885
68DAP/14DAP1.192660.249

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.662980.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.794790.058
Mature Green Tomato/Ripe Tomato0.994850.835
Immature Eggplant/Mature Eggplant3.905520.05
Ripe Pepper/Ripe Tomato0.375230.293
Mature Eggplant/Ripe Tomato2.997591

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.978420.944
1-1-2/M820.937081
12-2/M820.989491
12-4/M820.998671
1-3/M820.999651
2-1-1/M821.053650.403
2-1/M821.312560.345
2-6/M820.957951
3-2/M821.030870.549
4-1-1/M821.003621
4-1/M821.085090.512
4-3-2/M821.206880.262
4-3/M820.977511
5-3/M820.991991
6-2/M820.989581
6-3/M820.979131
7-1/M820.983641
7-2/M821.045331
9-3-2/M821.248651

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.879421
IL2-6/WTpooled1.105120.584
IL7-5/WTpooled0.907751
IL7-3/WTpooled0.870040.418
IL12-4/WTpooled0.808380.71
IL1-4/WTpooled0.986091
WT/WTpooled1.064781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.40870.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.989781
DC3000/delta hrp 6h0.938660.95
DC3000/delta hrp 12h0.977451
DC3000/delta hrp 24h0.927280.412

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.252850.081
DC3000 delta B/DC3000 delta AB1.467870.101

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.871331
Exp 36h3.197930.693
Exp 60h1.598950.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988741
Var 0h1.011051
Var 12h I row2-row11.20180.654
Var 12h NI row2-row11.192390.34
Var 36h I row2-row10.761520.575
Var 36h NI row2-row11.004970.852
Var 60h I row2-row10.951420.952
Var 60h NI row2-row10.891320.932
Time course 0hI-0hNI1.048360.662
Time course 12hI-12hNI1.035750.786
Time course 36hI-36hNI2.098380.004
Time course 60hI-60hNI5.586750.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.260030.294
transgenic ySAMdc/azygous control (breaker)1.10880.248
transgenic ySAMdc/azygous control (red)1.143250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.967010.122

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.258681

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.260530.307
Manapal/WT (break)0.937841
Manapal/WT (red)0.521060.36