Expression of 1-1-7.1.10.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97179 | 0.779 |
27DAP/17DAP | 1.15051 | 0.845 |
39DAP/27DAP | 1.2424 | 0.28 |
41DAP/39DAP | 1.10918 | 0.642 |
42DAP/41DAP | 1.29598 | 0.404 |
43DAP/42DAP | 1.08044 | 1 |
47DAP/43DAP | 0.73919 | 0.251 |
52DAP/47DAP | 1.18827 | 0.69 |
57DAP/52DAP | 0.97834 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01239 | 1 |
17DAP/reference | 0.98243 | 0.63 |
27DAP/reference | 0.9554 | 0.17 |
39DAP/reference | 0.96314 | 0.487 |
41DAP/reference | 0.96423 | 0.542 |
42DAP/reference | 0.94795 | 0.035 |
43DAP/reference | 1.01574 | 0.812 |
47DAP/reference | 0.98908 | 0.503 |
52DAP/reference | 0.9951 | 0.689 |
57DAP/reference | 0.96394 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1378 | 0.172 |
27DAP/17DAP | 1.15453 | 0.573 |
39DAP/27DAP | 1.10247 | 0.663 |
41DAP/39DAP | 1.2813 | 0.612 |
42DAP/41DAP | 1.17188 | 0.947 |
43DAP/42DAP | 1.02695 | 1 |
47DAP/43DAP | 1.9551 | 0.022 |
52DAP/47DAP | 0.90585 | 0.901 |
57DAP/52DAP | 1.61673 | 0.064 |
57DAP/7DAP | 4.69094 | 0.22 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93271 | 0.138 |
17DAP/reference | 0.96096 | 0.22 |
27DAP/reference | 0.90992 | 0.082 |
39DAP/reference | 0.96886 | 0.474 |
41DAP/reference | 1.01866 | 0.864 |
42DAP/reference | 1.05335 | 0.405 |
43DAP/reference | 0.96285 | 0.21 |
47DAP/reference | 0.96833 | 0.504 |
52DAP/reference | 0.93958 | 0.053 |
57DAP/reference | 0.99592 | 0.67 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98656 | 0.77 |
17DAP/reference | 1.02125 | 0.941 |
27DAP/reference | 0.94012 | 0.212 |
39DAP/reference | 0.99417 | 0.621 |
41DAP/reference | 0.9518 | 0.212 |
42DAP/reference | 0.92072 | 0.089 |
43DAP/reference | 1.07283 | 0.411 |
47DAP/reference | 0.92203 | 0.137 |
52DAP/reference | 1.05752 | 0.145 |
57DAP/reference | 1.02307 | 0.737 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95594 | 0.169 |
17DAP/reference | 1.00053 | 0.918 |
27DAP/reference | 1.04415 | 0.695 |
39DAP/reference | 0.98831 | 0.591 |
41DAP/reference | 0.92696 | 0.086 |
42DAP/reference | 0.86181 | 0.017 |
43DAP/reference | 0.92397 | 0.179 |
47DAP/reference | 0.89863 | 0.199 |
52DAP/reference | 0.88325 | 0.256 |
57DAP/reference | 0.80726 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92941 | 0.787 |
26DAP/20DAP | 1.19272 | 0.499 |
34DAP/26DAP | 0.81166 | 0.2 |
51DAP/34DAP | 1.15926 | 0.637 |
52DAP/51DAP | 0.97468 | 1 |
53DAP/52DAP | 1.62029 | 0.077 |
55DAP/53DAP | 1.9819 | 0.048 |
57DAP/55DAP | 1.73433 | 0.474 |
62DAP/57DAP | 0.62595 | 0.007 |
68DAP/62DAP | 1.06772 | 0.885 |
68DAP/14DAP | 1.19266 | 0.249 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.66298 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.79479 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.99485 | 0.835 |
Immature Eggplant/Mature Eggplant | 3.90552 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.37523 | 0.293 |
Mature Eggplant/Ripe Tomato | 2.99759 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97842 | 0.944 |
1-1-2/M82 | 0.93708 | 1 |
12-2/M82 | 0.98949 | 1 |
12-4/M82 | 0.99867 | 1 |
1-3/M82 | 0.99965 | 1 |
2-1-1/M82 | 1.05365 | 0.403 |
2-1/M82 | 1.31256 | 0.345 |
2-6/M82 | 0.95795 | 1 |
3-2/M82 | 1.03087 | 0.549 |
4-1-1/M82 | 1.00362 | 1 |
4-1/M82 | 1.08509 | 0.512 |
4-3-2/M82 | 1.20688 | 0.262 |
4-3/M82 | 0.97751 | 1 |
5-3/M82 | 0.99199 | 1 |
6-2/M82 | 0.98958 | 1 |
6-3/M82 | 0.97913 | 1 |
7-1/M82 | 0.98364 | 1 |
7-2/M82 | 1.04533 | 1 |
9-3-2/M82 | 1.24865 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87942 | 1 |
IL2-6/WTpooled | 1.10512 | 0.584 |
IL7-5/WTpooled | 0.90775 | 1 |
IL7-3/WTpooled | 0.87004 | 0.418 |
IL12-4/WTpooled | 0.80838 | 0.71 |
IL1-4/WTpooled | 0.98609 | 1 |
WT/WTpooled | 1.06478 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.4087 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98978 | 1 |
DC3000/delta hrp 6h | 0.93866 | 0.95 |
DC3000/delta hrp 12h | 0.97745 | 1 |
DC3000/delta hrp 24h | 0.92728 | 0.412 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.25285 | 0.081 |
DC3000 delta B/DC3000 delta AB | 1.46787 | 0.101 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.87133 | 1 |
Exp 36h | 3.19793 | 0.693 |
Exp 60h | 1.59895 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98874 | 1 |
Var 0h | 1.01105 | 1 |
Var 12h I row2-row1 | 1.2018 | 0.654 |
Var 12h NI row2-row1 | 1.19239 | 0.34 |
Var 36h I row2-row1 | 0.76152 | 0.575 |
Var 36h NI row2-row1 | 1.00497 | 0.852 |
Var 60h I row2-row1 | 0.95142 | 0.952 |
Var 60h NI row2-row1 | 0.89132 | 0.932 |
Time course 0hI-0hNI | 1.04836 | 0.662 |
Time course 12hI-12hNI | 1.03575 | 0.786 |
Time course 36hI-36hNI | 2.09838 | 0.004 |
Time course 60hI-60hNI | 5.58675 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.26003 | 0.294 |
transgenic ySAMdc/azygous control (breaker) | 1.1088 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.14325 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96701 | 0.122 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.25868 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.26053 | 0.307 |
Manapal/WT (break) | 0.93784 | 1 |
Manapal/WT (red) | 0.52106 | 0.36 |
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