Expression of 1-1-7.1.10.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991320.891
27DAP/17DAP0.957330.956
39DAP/27DAP1.044110.84
41DAP/39DAP1.384940.259
42DAP/41DAP1.143720.937
43DAP/42DAP1.128860.923
47DAP/43DAP0.994310.904
52DAP/47DAP1.191440.671
57DAP/52DAP1.008320.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.897730.092
17DAP/reference1.001771
27DAP/reference0.905540.157
39DAP/reference1.019210.857
41DAP/reference0.950320.542
42DAP/reference0.892360.012
43DAP/reference1.006060.957
47DAP/reference0.922210.098
52DAP/reference0.877690.202
57DAP/reference0.863290.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990430.801
27DAP/17DAP1.009740.988
39DAP/27DAP1.054070.532
41DAP/39DAP1.042150.883
42DAP/41DAP1.082210.727
43DAP/42DAP1.009510.83
47DAP/43DAP1.044870.713
52DAP/47DAP0.999651
57DAP/52DAP0.978790.745
57DAP/7DAP1.143880.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.686610.036
17DAP/reference1.399910.006
27DAP/reference1.146280.049
39DAP/reference0.958650.198
41DAP/reference0.950330.235
42DAP/reference0.876110.082
43DAP/reference0.964420.305
47DAP/reference0.87040.128
52DAP/reference0.94380.304
57DAP/reference0.841680.036

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.038150.75
17DAP/reference0.913930.307
27DAP/reference0.888630.129
39DAP/reference0.842730.074
41DAP/reference0.917630.169
42DAP/reference0.780940.014
43DAP/reference0.958330.43
47DAP/reference0.916090.056
52DAP/reference0.944620.093
57DAP/reference0.951950.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.451190.034
17DAP/reference1.217520.306
27DAP/reference1.126510.131
39DAP/reference1.147590.12
41DAP/reference0.928630.237
42DAP/reference0.933420.445
43DAP/reference0.890470.206
47DAP/reference0.910420.249
52DAP/reference0.812980.169
57DAP/reference0.759870.025

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001861
26DAP/20DAP1.025981
34DAP/26DAP1.035021
51DAP/34DAP0.977750.807
52DAP/51DAP1.007370.954
53DAP/52DAP1.17129
55DAP/53DAP0.983320.917
57DAP/55DAP0.829030.42
62DAP/57DAP1.016161
68DAP/62DAP1.096290.858
68DAP/14DAP1.156511

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.02731

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.115310.287
Mature Green Tomato/Ripe Tomato1.251170.69
Immature Eggplant/Mature Eggplant0.763790.084
Ripe Pepper/Ripe Tomato2.62361
Mature Eggplant/Ripe Tomato3.516841

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.84640.934
1-1-2/M821.040021
12-2/M820.854130.955
12-4/M821.028661
1-3/M820.973441
2-1-1/M821.22573
2-1/M820.978451
2-6/M821.126070.425
3-2/M821.04212
4-1-1/M820.877251
4-1/M820.817621
4-3-2/M820.860081
4-3/M820.633480.366
5-3/M821.052031
6-2/M820.91151
6-3/M820.920051
7-1/M821.047361
7-2/M820.99731
9-3-2/M821.08688

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.182930.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.119650.722
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.086951
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.008251

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.968911
DC3000/delta hrp 6h0.967810.95
DC3000/delta hrp 12h0.870031
DC3000/delta hrp 24h0.831180.163

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.882410.024
DC3000 delta B/DC3000 delta AB0.965070.47

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.982321
Exp 36h0.891840.699
Exp 60h0.742860.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004111
Var 0h1.201650.325
Var 12h I row2-row10.897870.357
Var 12h NI row2-row11.030271
Var 36h I row2-row10.977941
Var 36h NI row2-row11.095721
Var 60h I row2-row11.205461
Var 60h NI row2-row11.063610.904
Time course 0hI-0hNI1.002161
Time course 12hI-12hNI1.018730.816
Time course 36hI-36hNI1.037940.651
Time course 60hI-60hNI0.550590.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.143650.232
transgenic ySAMdc/azygous control (breaker)1.099181
transgenic ySAMdc/azygous control (red)1.054310.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.961160.078

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.213210.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.964790.083
Manapal/WT (break)1.571540.126
Manapal/WT (red)1.734720.164