Expression of 1-1-7.1.10.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.694740.037
27DAP/17DAP1.035680.939
39DAP/27DAP3.023550.025
41DAP/39DAP0.635870.087
42DAP/41DAP0.628580.774
43DAP/42DAP1.202040.698
47DAP/43DAP0.306290.041
52DAP/47DAP1.394690.319
57DAP/52DAP1.660340.735

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.866340.224
17DAP/reference1.691740.412
27DAP/reference0.743250.023
39DAP/reference1.306040.747
41DAP/reference1.919810.145
42DAP/reference3.513820.001
43DAP/reference0.863040.103
47DAP/reference1.142370.365
52DAP/reference0.987640.564
57DAP/reference0.919130.324

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP4.080180.036
27DAP/17DAP1.028150.969
39DAP/27DAP0.546560.052
41DAP/39DAP1.022580.713
42DAP/41DAP0.955810.511
43DAP/42DAP3.776020.013
47DAP/43DAP0.63740.018
52DAP/47DAP1.567570.221
57DAP/52DAP1.870230.056
57DAP/7DAP2.22350.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.600840.177
17DAP/reference2.374110.006
27DAP/reference2.277810.007
39DAP/reference3.264940.006
41DAP/reference4.536930.008
42DAP/reference4.063360.006
43DAP/reference3.553540.006
47DAP/reference0.859240.168
52DAP/reference0.844110.179
57DAP/reference0.73420.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.530120.007
17DAP/reference2.054320.023
27DAP/reference3.19250.012
39DAP/reference3.614120.011
41DAP/reference3.082990.005
42DAP/reference3.892150.007
43DAP/reference1.629780.457
47DAP/reference1.660920.232
52DAP/reference4.464760.006
57DAP/reference1.125090.688

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.898290.29
17DAP/reference1.880030.097
27DAP/reference4.190830.01
39DAP/reference3.903390.004
41DAP/reference2.89450.007
42DAP/reference3.297210.006
43DAP/reference2.458480.007
47DAP/reference0.990950.574
52DAP/reference1.67470.057
57DAP/reference1.152360.73

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.065790.966
26DAP/20DAP0.862530.512
34DAP/26DAP1.189541
51DAP/34DAP1.536940.511
52DAP/51DAP1.181510.704
53DAP/52DAP0.958770.876
55DAP/53DAP1.25390.109
57DAP/55DAP0.955490.823
62DAP/57DAP1.044421
68DAP/62DAP1.08360.813
68DAP/14DAP0.989381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker12.31980.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.299160.058
Immature Eggplant/Mature Eggplant0.060690.047
Ripe Pepper/Ripe Tomato0.021990.224
Mature Eggplant/Ripe Tomato0.142170.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.970710.841
1-1-2/M822.632071
12-2/M821.21641
12-4/M821.674871
1-3/M821.770111
2-1-1/M821.516120.422
2-1/M820.901920.74
2-6/M821.450881
3-2/M821.146880.717
4-1-1/M824.568920.938
4-1/M824.580860.853
4-3-2/M821.888520.246
4-3/M822.573980.268
5-3/M821.364080.572
6-2/M822.640110.253
6-3/M821.432911
7-1/M821.669340.598
7-2/M823.822450.318
9-3-2/M821.772991

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.02291
IL2-6/WTpooled1.048481
IL7-5/WTpooled1.083061
IL7-3/WTpooled1.043160.362
IL12-4/WTpooled0.842020.566
IL1-4/WTpooled0.910960.699
WT/WTpooled1.00691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.595820.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.250620.629
DC3000/delta hrp 6h1.047611
DC3000/delta hrp 12h1.069711
DC3000/delta hrp 24h0.542960.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.436480.041
DC3000 delta B/DC3000 delta AB0.411650.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.208061
Exp 36h0.945240.879
Exp 60h0.554440.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99791
Var 0h0.852951
Var 12h I row2-row11.288540.736
Var 12h NI row2-row11.176531
Var 36h I row2-row11.05471
Var 36h NI row2-row12.101231
Var 60h I row2-row11.046821
Var 60h NI row2-row11.117021
Time course 0hI-0hNI1.101410.63
Time course 12hI-12hNI0.729630.033
Time course 36hI-36hNI0.578250.023
Time course 60hI-60hNI0.236530.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.062840.654
transgenic ySAMdc/azygous control (breaker)1.044611
transgenic ySAMdc/azygous control (red)1.378890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.773240.058

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.195910.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.111170.105
Manapal/WT (break)1.03371
Manapal/WT (red)0.967090.607