Expression of 1-1-7.1.10.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.69474 | 0.037 |
27DAP/17DAP | 1.03568 | 0.939 |
39DAP/27DAP | 3.02355 | 0.025 |
41DAP/39DAP | 0.63587 | 0.087 |
42DAP/41DAP | 0.62858 | 0.774 |
43DAP/42DAP | 1.20204 | 0.698 |
47DAP/43DAP | 0.30629 | 0.041 |
52DAP/47DAP | 1.39469 | 0.319 |
57DAP/52DAP | 1.66034 | 0.735 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86634 | 0.224 |
17DAP/reference | 1.69174 | 0.412 |
27DAP/reference | 0.74325 | 0.023 |
39DAP/reference | 1.30604 | 0.747 |
41DAP/reference | 1.91981 | 0.145 |
42DAP/reference | 3.51382 | 0.001 |
43DAP/reference | 0.86304 | 0.103 |
47DAP/reference | 1.14237 | 0.365 |
52DAP/reference | 0.98764 | 0.564 |
57DAP/reference | 0.91913 | 0.324 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 4.08018 | 0.036 |
27DAP/17DAP | 1.02815 | 0.969 |
39DAP/27DAP | 0.54656 | 0.052 |
41DAP/39DAP | 1.02258 | 0.713 |
42DAP/41DAP | 0.95581 | 0.511 |
43DAP/42DAP | 3.77602 | 0.013 |
47DAP/43DAP | 0.6374 | 0.018 |
52DAP/47DAP | 1.56757 | 0.221 |
57DAP/52DAP | 1.87023 | 0.056 |
57DAP/7DAP | 2.2235 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.60084 | 0.177 |
17DAP/reference | 2.37411 | 0.006 |
27DAP/reference | 2.27781 | 0.007 |
39DAP/reference | 3.26494 | 0.006 |
41DAP/reference | 4.53693 | 0.008 |
42DAP/reference | 4.06336 | 0.006 |
43DAP/reference | 3.55354 | 0.006 |
47DAP/reference | 0.85924 | 0.168 |
52DAP/reference | 0.84411 | 0.179 |
57DAP/reference | 0.7342 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.53012 | 0.007 |
17DAP/reference | 2.05432 | 0.023 |
27DAP/reference | 3.1925 | 0.012 |
39DAP/reference | 3.61412 | 0.011 |
41DAP/reference | 3.08299 | 0.005 |
42DAP/reference | 3.89215 | 0.007 |
43DAP/reference | 1.62978 | 0.457 |
47DAP/reference | 1.66092 | 0.232 |
52DAP/reference | 4.46476 | 0.006 |
57DAP/reference | 1.12509 | 0.688 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89829 | 0.29 |
17DAP/reference | 1.88003 | 0.097 |
27DAP/reference | 4.19083 | 0.01 |
39DAP/reference | 3.90339 | 0.004 |
41DAP/reference | 2.8945 | 0.007 |
42DAP/reference | 3.29721 | 0.006 |
43DAP/reference | 2.45848 | 0.007 |
47DAP/reference | 0.99095 | 0.574 |
52DAP/reference | 1.6747 | 0.057 |
57DAP/reference | 1.15236 | 0.73 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06579 | 0.966 |
26DAP/20DAP | 0.86253 | 0.512 |
34DAP/26DAP | 1.18954 | 1 |
51DAP/34DAP | 1.53694 | 0.511 |
52DAP/51DAP | 1.18151 | 0.704 |
53DAP/52DAP | 0.95877 | 0.876 |
55DAP/53DAP | 1.2539 | 0.109 |
57DAP/55DAP | 0.95549 | 0.823 |
62DAP/57DAP | 1.04442 | 1 |
68DAP/62DAP | 1.0836 | 0.813 |
68DAP/14DAP | 0.98938 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 12.3198 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.29916 | 0.058 |
Immature Eggplant/Mature Eggplant | 0.06069 | 0.047 |
Ripe Pepper/Ripe Tomato | 0.02199 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.14217 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97071 | 0.841 |
1-1-2/M82 | 2.63207 | 1 |
12-2/M82 | 1.2164 | 1 |
12-4/M82 | 1.67487 | 1 |
1-3/M82 | 1.77011 | 1 |
2-1-1/M82 | 1.51612 | 0.422 |
2-1/M82 | 0.90192 | 0.74 |
2-6/M82 | 1.45088 | 1 |
3-2/M82 | 1.14688 | 0.717 |
4-1-1/M82 | 4.56892 | 0.938 |
4-1/M82 | 4.58086 | 0.853 |
4-3-2/M82 | 1.88852 | 0.246 |
4-3/M82 | 2.57398 | 0.268 |
5-3/M82 | 1.36408 | 0.572 |
6-2/M82 | 2.64011 | 0.253 |
6-3/M82 | 1.43291 | 1 |
7-1/M82 | 1.66934 | 0.598 |
7-2/M82 | 3.82245 | 0.318 |
9-3-2/M82 | 1.77299 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0229 | 1 |
IL2-6/WTpooled | 1.04848 | 1 |
IL7-5/WTpooled | 1.08306 | 1 |
IL7-3/WTpooled | 1.04316 | 0.362 |
IL12-4/WTpooled | 0.84202 | 0.566 |
IL1-4/WTpooled | 0.91096 | 0.699 |
WT/WTpooled | 1.0069 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.59582 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.25062 | 0.629 |
DC3000/delta hrp 6h | 1.04761 | 1 |
DC3000/delta hrp 12h | 1.06971 | 1 |
DC3000/delta hrp 24h | 0.54296 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.43648 | 0.041 |
DC3000 delta B/DC3000 delta AB | 0.41165 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.20806 | 1 |
Exp 36h | 0.94524 | 0.879 |
Exp 60h | 0.55444 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9979 | 1 |
Var 0h | 0.85295 | 1 |
Var 12h I row2-row1 | 1.28854 | 0.736 |
Var 12h NI row2-row1 | 1.17653 | 1 |
Var 36h I row2-row1 | 1.0547 | 1 |
Var 36h NI row2-row1 | 2.10123 | 1 |
Var 60h I row2-row1 | 1.04682 | 1 |
Var 60h NI row2-row1 | 1.11702 | 1 |
Time course 0hI-0hNI | 1.10141 | 0.63 |
Time course 12hI-12hNI | 0.72963 | 0.033 |
Time course 36hI-36hNI | 0.57825 | 0.023 |
Time course 60hI-60hNI | 0.23653 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06284 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 1.04461 | 1 |
transgenic ySAMdc/azygous control (red) | 1.37889 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.77324 | 0.058 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19591 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11117 | 0.105 |
Manapal/WT (break) | 1.0337 | 1 |
Manapal/WT (red) | 0.96709 | 0.607 |
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