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Expression of 1-1-7.1.11.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.884740.486
27DAP/17DAP0.937380.863
39DAP/27DAP1.030190.876
41DAP/39DAP1.073360.871
42DAP/41DAP1.210710.877
43DAP/42DAP0.970690.925
47DAP/43DAP0.944380.754
52DAP/47DAP0.934080.772
57DAP/52DAP1.083481

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.980850.476
17DAP/reference1.052070.427
27DAP/reference1.027940.863
39DAP/reference1.075560.514
41DAP/reference1.029230.759
42DAP/reference0.967490.129
43DAP/reference0.987580.763
47DAP/reference0.926490.027
52DAP/reference0.948750.36
57DAP/reference0.881990.112

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.168230.271
27DAP/17DAP1.025731
39DAP/27DAP0.84260.26
41DAP/39DAP1.064550.914
42DAP/41DAP1.013630.887
43DAP/42DAP0.810.04
47DAP/43DAP0.973680.857
52DAP/47DAP1.023720.933
57DAP/52DAP1.031390.957
57DAP/7DAP1.010161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.085050.227
17DAP/reference1.091340.123
27DAP/reference1.013241
39DAP/reference1.070290.149
41DAP/reference1.071450.241
42DAP/reference0.963970.32
43DAP/reference1.045050.707
47DAP/reference1.119250.158
52DAP/reference0.900930.097
57DAP/reference1.066060.027

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.015020.75
17DAP/reference0.943620.239
27DAP/reference0.980640.537
39DAP/reference0.952450.173
41DAP/reference0.940250.242
42DAP/reference0.903360.089
43DAP/reference0.879890.098
47DAP/reference1.024690.841
52DAP/reference0.99970.761
57DAP/reference0.976790.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121460.224
17DAP/reference1.037450.657
27DAP/reference1.154380.062
39DAP/reference1.084630.254
41DAP/reference1.062480.439
42DAP/reference1.018060.877
43DAP/reference0.972390.568
47DAP/reference0.97330.494
52DAP/reference1.094380.457
57DAP/reference0.918060.278

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.971550.997
26DAP/20DAP2.523430.125
34DAP/26DAP0.843390.61
51DAP/34DAP1.593080.095
52DAP/51DAP1.005541
53DAP/52DAP1.162150.307
55DAP/53DAP0.805650.037
57DAP/55DAP0.818870.309
62DAP/57DAP0.990960.994
68DAP/62DAP1.051720.931
68DAP/14DAP0.816630.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.750580.137

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.264340.058
Mature Green Tomato/Ripe Tomato3.015370.02
Immature Eggplant/Mature Eggplant1.111060.417
Ripe Pepper/Ripe Tomato1.176851
Mature Eggplant/Ripe Tomato1.451080.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.939280.944
1-1-2/M820.990171
12-2/M821.181851
12-4/M821.00581
1-3/M821.329030.277
2-1-1/M820.971990.784
2-1/M820.934341
2-6/M820.893320.501
3-2/M821.056350.967
4-1-1/M820.820581
4-1/M820.85276N/A
4-3-2/M820.927981
4-3/M820.987211
5-3/M821.164580.496
6-2/M821.254361
6-3/M821.137611
7-1/M820.943821
7-2/M821.150890.385
9-3-2/M821.147831

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.087130.365
IL2-6/WTpooled1.060480.788
IL7-5/WTpooled1.125691
IL7-3/WTpooled1.105631
IL12-4/WTpooled1.154950.695
IL1-4/WTpooled1.027381
WT/WTpooled0.98571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.957520.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.031811
DC3000/delta hrp 6h1.07121
DC3000/delta hrp 12h0.917531
DC3000/delta hrp 24h0.880160.252

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.957980.629
DC3000 delta B/DC3000 delta AB0.999121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.685621
Exp 36h1.086021
Exp 60h0.940110.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.048581
Var 0h0.472920.933
Var 12h I row2-row11.053050.692
Var 12h NI row2-row10.91610.713
Var 36h I row2-row10.928840.805
Var 36h NI row2-row11.034911
Var 60h I row2-row11.128731
Var 60h NI row2-row11.050061
Time course 0hI-0hNI0.912810.454
Time course 12hI-12hNI1.115840.611
Time course 36hI-36hNI1.06110.28
Time course 60hI-60hNI0.920150.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.047480.654
transgenic ySAMdc/azygous control (breaker)0.775970.137
transgenic ySAMdc/azygous control (red)1.01311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.043350.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.930520.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.140210.14
Manapal/WT (break)1.194510.123
Manapal/WT (red)0.922460.424