Expression of 1-1-7.1.11.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.136450.656
27DAP/17DAP1.251950.742
39DAP/27DAP0.922360.583
41DAP/39DAP0.946990.739
42DAP/41DAP1.173060.843
43DAP/42DAP1.024121
47DAP/43DAP1.23940.555
52DAP/47DAP0.843970.587
57DAP/52DAP1.085940.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.6316
27DAP/referenceN/AN/A
39DAP/reference1.05403
41DAP/reference1.52932
42DAP/reference1.241080.565
43DAP/referenceN/AN/A
47DAP/reference1.125451
52DAP/reference0.74798
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.02030.923
27DAP/17DAP0.999451
39DAP/27DAP1.017530.77
41DAP/39DAP0.941060.839
42DAP/41DAP1.044121
43DAP/42DAP1.041630.446
47DAP/43DAP0.962690.606
52DAP/47DAP0.990260.959
57DAP/52DAP1.035770.874
57DAP/7DAP0.847561

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.024220.776
17DAP/reference1.067270.045
27DAP/reference1.053080.03
39DAP/reference1.122560.053
41DAP/reference1.056650.291
42DAP/reference1.006061
43DAP/reference1.179280.016
47DAP/reference0.987010.671
52DAP/reference1.076880.113
57DAP/reference1.067980.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053430.39
17DAP/reference1.083310.543
27DAP/reference1.261410.471
39DAP/reference0.889120.099
41DAP/reference0.9150.04
42DAP/reference0.98401
43DAP/reference0.984520.692
47DAP/reference2.39988
52DAP/reference0.93380.469
57DAP/reference1.322390.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069820.456
17DAP/reference1.030990.641
27DAP/reference1.057790.115
39DAP/reference1.054740.496
41DAP/reference1.004291
42DAP/reference1.051550.382
43DAP/reference0.980910.66
47DAP/reference0.9730.509
52DAP/reference1.041530.683
57DAP/reference1.158710.063

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.004830.966
26DAP/20DAP0.925581
34DAP/26DAP1.013761
51DAP/34DAP0.999450.96
52DAP/51DAP1.064690.522
53DAP/52DAP1.213690.25
55DAP/53DAP1.052830.861
57DAP/55DAP1.943220.324
62DAP/57DAP0.98741
68DAP/62DAP1.116440.653
68DAP/14DAP0.975381

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.859080.145

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.962770.673
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.188280.23
Ripe Pepper/Ripe Tomato1.300141
Mature Eggplant/Ripe Tomato1.400880.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.075530.742
1-1-2/M821.045831
12-2/M820.951890.955
12-4/M821.090331
1-3/M820.89001
2-1-1/M821.092310.764
2-1/M821.118571
2-6/M821.100870.364
3-2/M820.81831
4-1-1/M821.002351
4-1/M820.83627
4-3-2/M820.88318
4-3/M821.048250.268
5-3/M821.06361
6-2/M821.141181
6-3/M821.01321
7-1/M821.083150.992
7-2/M821.10950.299
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.993151
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.032571
IL12-4/WTpooled1.126960.557
IL1-4/WTpooled0.9534
WT/WTpooled0.929481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.162640.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.888781
DC3000/delta hrp 6h1.385261
DC3000/delta hrp 12h0.985661
DC3000/delta hrp 24h1.135340.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.16230.313
DC3000 delta B/DC3000 delta AB1.043630.51

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.917991
Exp 36hN/AN/A
Exp 60h1.188970.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995041
Var 0h0.922330.933
Var 12h I row2-row11.106440.544
Var 12h NI row2-row10.855190.494
Var 36h I row2-row11.04271
Var 36h NI row2-row10.977260.852
Var 60h I row2-row10.900370.582
Var 60h NI row2-row11.289390.904
Time course 0hI-0hNI1.103770.852
Time course 12hI-12hNI1.116480.321
Time course 36hI-36hNI1.095330.248
Time course 60hI-60hNI1.142360.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.879820.454
transgenic ySAMdc/azygous control (breaker)1.295841
transgenic ySAMdc/azygous control (red)1.183990.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.701580.172
Manapal/WT (break)0.624730.299
Manapal/WT (red)1.033541