Expression of 1-1-7.1.11.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.004840.568
27DAP/17DAP1.38520.613
39DAP/27DAP0.975340.652
41DAP/39DAP1.263160.233
42DAP/41DAP0.957471
43DAP/42DAP1.143880.867
47DAP/43DAP1.408010.223
52DAP/47DAP1.457020.438
57DAP/52DAP1.166040.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference9.99016
17DAP/reference0.85983
27DAP/reference1.50839
39DAP/reference0.698380.254
41DAP/reference1.51419
42DAP/reference0.59297
43DAP/reference0.78699
47DAP/reference0.750530.137
52DAP/referenceN/AN/A
57DAP/reference2.708070.07

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.270630.192
27DAP/17DAP1.475350.077
39DAP/27DAP1.528640.096
41DAP/39DAP0.475830.013
42DAP/41DAP2.86030.002
43DAP/42DAP3.811880.014
47DAP/43DAP0.979080.909
52DAP/47DAP1.170310.66
57DAP/52DAP0.911060.558
57DAP/7DAP3.897180.207

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897710.224
17DAP/reference0.871770.064
27DAP/reference0.97440.462
39DAP/reference0.893160.17
41DAP/reference0.976420.489
42DAP/reference1.009871
43DAP/reference0.833980.029
47DAP/reference1.00361
52DAP/reference1.138690.286
57DAP/reference0.815950.031

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.822460.083
17DAP/reference0.59020.017
27DAP/reference1.10411
39DAP/reference0.713420.058
41DAP/reference0.748710.028
42DAP/reference0.89163
43DAP/reference0.962610.592
47DAP/reference1.360350.556
52DAP/reference0.551770.005
57DAP/reference0.539260.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.901750.135
17DAP/reference0.957320.658
27DAP/reference1.04760.805
39DAP/reference1.012370.912
41DAP/reference1.12040.411
42DAP/reference1.263070.566
43DAP/reference1.080240.336
47DAP/reference1.26325
52DAP/reference1.064320.779
57DAP/reference1.47567

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.906990.566
26DAP/20DAP0.822150.512
34DAP/26DAP1.438940.819
51DAP/34DAP2.175870.055
52DAP/51DAP0.728150.151
53DAP/52DAP3.292250.02
55DAP/53DAP0.966980.725
57DAP/55DAP0.836670.375
62DAP/57DAP0.821320.466
68DAP/62DAP1.022911
68DAP/14DAP0.994241

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.1480.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.73340.215
Mature Green Tomato/Ripe Tomato0.457380.055
Immature Eggplant/Mature Eggplant1.452650.05
Ripe Pepper/Ripe Tomato0.563590.293
Mature Eggplant/Ripe Tomato0.430781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M822.232351
1-1-2/M821.499991
12-2/M820.856010.955
12-4/M821.522981
1-3/M820.898820.501
2-1-1/M821.233260.689
2-1/M820.943350.74
2-6/M821.19271
3-2/M820.794121
4-1-1/M820.417691
4-1/M821.163531
4-3-2/M820.867320.698
4-3/M821.203241
5-3/M821.281271
6-2/M821.226891
6-3/M821.628891
7-1/M820.992131
7-2/M820.835750.881
9-3-2/M821.474921

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.093920.277
IL2-6/WTpooled1.105230.531
IL7-5/WTpooled0.984831
IL7-3/WTpooled1.011381
IL12-4/WTpooled1.14710.553
IL1-4/WTpooled1.027781
WT/WTpooled1.019211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.520260.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.158650.921
DC3000/delta hrp 6h0.883250.95
DC3000/delta hrp 12h0.763021
DC3000/delta hrp 24h4.285070.022

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.119810.515
DC3000 delta B/DC3000 delta AB1.296140.246

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.817721
Exp 36h1.715410.693
Exp 60h1.195840.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.035351
Var 0h1.012331
Var 12h I row2-row11.320730.215
Var 12h NI row2-row11.051521
Var 36h I row2-row10.965721
Var 36h NI row2-row11.659561
Var 60h I row2-row10.739870.306
Var 60h NI row2-row11.03671
Time course 0hI-0hNI1.116290.63
Time course 12hI-12hNI0.964410.597
Time course 36hI-36hNI1.018781
Time course 60hI-60hNI2.078980.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.054650.748
transgenic ySAMdc/azygous control (breaker)0.784450.173
transgenic ySAMdc/azygous control (red)0.974711

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.998751
Manapal/WT (break)1.161180.381
Manapal/WT (red)0.899440.229