Expression of 1-1-7.1.11.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00484 | 0.568 |
27DAP/17DAP | 1.3852 | 0.613 |
39DAP/27DAP | 0.97534 | 0.652 |
41DAP/39DAP | 1.26316 | 0.233 |
42DAP/41DAP | 0.95747 | 1 |
43DAP/42DAP | 1.14388 | 0.867 |
47DAP/43DAP | 1.40801 | 0.223 |
52DAP/47DAP | 1.45702 | 0.438 |
57DAP/52DAP | 1.16604 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 9.99016 | |
17DAP/reference | 0.85983 | |
27DAP/reference | 1.50839 | |
39DAP/reference | 0.69838 | 0.254 |
41DAP/reference | 1.51419 | |
42DAP/reference | 0.59297 | |
43DAP/reference | 0.78699 | |
47DAP/reference | 0.75053 | 0.137 |
52DAP/reference | N/A | N/A |
57DAP/reference | 2.70807 | 0.07 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27063 | 0.192 |
27DAP/17DAP | 1.47535 | 0.077 |
39DAP/27DAP | 1.52864 | 0.096 |
41DAP/39DAP | 0.47583 | 0.013 |
42DAP/41DAP | 2.8603 | 0.002 |
43DAP/42DAP | 3.81188 | 0.014 |
47DAP/43DAP | 0.97908 | 0.909 |
52DAP/47DAP | 1.17031 | 0.66 |
57DAP/52DAP | 0.91106 | 0.558 |
57DAP/7DAP | 3.89718 | 0.207 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89771 | 0.224 |
17DAP/reference | 0.87177 | 0.064 |
27DAP/reference | 0.9744 | 0.462 |
39DAP/reference | 0.89316 | 0.17 |
41DAP/reference | 0.97642 | 0.489 |
42DAP/reference | 1.00987 | 1 |
43DAP/reference | 0.83398 | 0.029 |
47DAP/reference | 1.0036 | 1 |
52DAP/reference | 1.13869 | 0.286 |
57DAP/reference | 0.81595 | 0.031 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82246 | 0.083 |
17DAP/reference | 0.5902 | 0.017 |
27DAP/reference | 1.1041 | 1 |
39DAP/reference | 0.71342 | 0.058 |
41DAP/reference | 0.74871 | 0.028 |
42DAP/reference | 0.89163 | |
43DAP/reference | 0.96261 | 0.592 |
47DAP/reference | 1.36035 | 0.556 |
52DAP/reference | 0.55177 | 0.005 |
57DAP/reference | 0.53926 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90175 | 0.135 |
17DAP/reference | 0.95732 | 0.658 |
27DAP/reference | 1.0476 | 0.805 |
39DAP/reference | 1.01237 | 0.912 |
41DAP/reference | 1.1204 | 0.411 |
42DAP/reference | 1.26307 | 0.566 |
43DAP/reference | 1.08024 | 0.336 |
47DAP/reference | 1.26325 | |
52DAP/reference | 1.06432 | 0.779 |
57DAP/reference | 1.47567 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90699 | 0.566 |
26DAP/20DAP | 0.82215 | 0.512 |
34DAP/26DAP | 1.43894 | 0.819 |
51DAP/34DAP | 2.17587 | 0.055 |
52DAP/51DAP | 0.72815 | 0.151 |
53DAP/52DAP | 3.29225 | 0.02 |
55DAP/53DAP | 0.96698 | 0.725 |
57DAP/55DAP | 0.83667 | 0.375 |
62DAP/57DAP | 0.82132 | 0.466 |
68DAP/62DAP | 1.02291 | 1 |
68DAP/14DAP | 0.99424 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.148 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7334 | 0.215 |
Mature Green Tomato/Ripe Tomato | 0.45738 | 0.055 |
Immature Eggplant/Mature Eggplant | 1.45265 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.56359 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.43078 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 2.23235 | 1 |
1-1-2/M82 | 1.49999 | 1 |
12-2/M82 | 0.85601 | 0.955 |
12-4/M82 | 1.52298 | 1 |
1-3/M82 | 0.89882 | 0.501 |
2-1-1/M82 | 1.23326 | 0.689 |
2-1/M82 | 0.94335 | 0.74 |
2-6/M82 | 1.1927 | 1 |
3-2/M82 | 0.79412 | 1 |
4-1-1/M82 | 0.41769 | 1 |
4-1/M82 | 1.16353 | 1 |
4-3-2/M82 | 0.86732 | 0.698 |
4-3/M82 | 1.20324 | 1 |
5-3/M82 | 1.28127 | 1 |
6-2/M82 | 1.22689 | 1 |
6-3/M82 | 1.62889 | 1 |
7-1/M82 | 0.99213 | 1 |
7-2/M82 | 0.83575 | 0.881 |
9-3-2/M82 | 1.47492 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09392 | 0.277 |
IL2-6/WTpooled | 1.10523 | 0.531 |
IL7-5/WTpooled | 0.98483 | 1 |
IL7-3/WTpooled | 1.01138 | 1 |
IL12-4/WTpooled | 1.1471 | 0.553 |
IL1-4/WTpooled | 1.02778 | 1 |
WT/WTpooled | 1.01921 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.52026 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.15865 | 0.921 |
DC3000/delta hrp 6h | 0.88325 | 0.95 |
DC3000/delta hrp 12h | 0.76302 | 1 |
DC3000/delta hrp 24h | 4.28507 | 0.022 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.11981 | 0.515 |
DC3000 delta B/DC3000 delta AB | 1.29614 | 0.246 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81772 | 1 |
Exp 36h | 1.71541 | 0.693 |
Exp 60h | 1.19584 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03535 | 1 |
Var 0h | 1.01233 | 1 |
Var 12h I row2-row1 | 1.32073 | 0.215 |
Var 12h NI row2-row1 | 1.05152 | 1 |
Var 36h I row2-row1 | 0.96572 | 1 |
Var 36h NI row2-row1 | 1.65956 | 1 |
Var 60h I row2-row1 | 0.73987 | 0.306 |
Var 60h NI row2-row1 | 1.0367 | 1 |
Time course 0hI-0hNI | 1.11629 | 0.63 |
Time course 12hI-12hNI | 0.96441 | 0.597 |
Time course 36hI-36hNI | 1.01878 | 1 |
Time course 60hI-60hNI | 2.07898 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05465 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 0.78445 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.97471 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99875 | 1 |
Manapal/WT (break) | 1.16118 | 0.381 |
Manapal/WT (red) | 0.89944 | 0.229 |
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