Expression of 1-1-7.1.12.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.837110.187
27DAP/17DAP0.78070.373
39DAP/27DAP1.185450.649
41DAP/39DAP0.758870.177
42DAP/41DAP0.949241
43DAP/42DAP0.949470.854
47DAP/43DAP0.764480.308
52DAP/47DAP1.208730.681
57DAP/52DAP0.971710.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.292530.013
17DAP/reference0.987350.737
27DAP/reference0.819040.013
39DAP/reference0.823330.035
41DAP/reference0.90690.267
42DAP/reference1.18850.012
43DAP/reference1.138640.269
47DAP/reference1.271930.142
52DAP/reference0.780960.025
57DAP/reference0.746820.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.921020.277
27DAP/17DAP1.051550.798
39DAP/27DAP0.892530.239
41DAP/39DAP0.958060.893
42DAP/41DAP1.022771
43DAP/42DAP0.950720.111
47DAP/43DAP1.008960.969
52DAP/47DAP0.799860.29
57DAP/52DAP0.996980.833
57DAP/7DAP0.568270.143

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.764330.037
17DAP/reference1.574420.006
27DAP/reference1.348190.007
39DAP/reference1.209170.007
41DAP/reference1.258460.013
42DAP/reference1.183220.024
43DAP/reference1.224890.02
47DAP/reference1.131220.191
52DAP/reference1.185820.034
57DAP/reference1.052670.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.159220.22
17DAP/reference1.42840.028
27DAP/reference1.40890.019
39DAP/reference1.025671
41DAP/reference1.234820.052
42DAP/reference1.169780.455
43DAP/reference1.019830.846
47DAP/reference0.981420.543
52DAP/reference0.83050.009
57DAP/reference0.958350.361

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.523980.029
17DAP/reference1.198180.376
27DAP/reference1.322220.041
39DAP/reference1.292140.023
41DAP/reference1.111760.12
42DAP/reference1.287210.027
43DAP/reference1.396330.024
47DAP/reference0.893810.084
52DAP/reference1.177290.306
57DAP/reference0.926590.293

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.01881
26DAP/20DAP1.369240.243
34DAP/26DAP0.943130.811
51DAP/34DAP0.862230.161
52DAP/51DAP1.008280.965
53DAP/52DAP1.134290.356
55DAP/53DAP0.979140.852
57DAP/55DAP1.033210.997
62DAP/57DAP1.035110.902
68DAP/62DAP0.879550.345
68DAP/14DAP0.841311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.186320.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.91440.481
Mature Green Tomato/Ripe Tomato1.616030.034
Immature Eggplant/Mature Eggplant0.988331
Ripe Pepper/Ripe Tomato1.300050.258
Mature Eggplant/Ripe Tomato1.803890.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.08341
1-1-2/M821.035721
12-2/M820.997621
12-4/M820.984951
1-3/M821.120390.479
2-1-1/M820.913940.784
2-1/M821.010511
2-6/M821.0421
3-2/M820.863870.455
4-1-1/M821.252061
4-1/M820.990511
4-3-2/M821.306230.508
4-3/M821.445520.268
5-3/M821.087271
6-2/M821.230971
6-3/M820.999471
7-1/M821.051691
7-2/M821.070981
9-3-2/M821.026671

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.1178
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.086241

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.977331
DC3000/delta hrp 6h1.138751
DC3000/delta hrp 12h1.021341
DC3000/delta hrp 24h1.000031

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.256490.044
DC3000 delta B/DC3000 delta AB1.348170.141

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.179781
Exp 36h1.212341
Exp 60h1.337350.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013751
Var 0h1.070810.782
Var 12h I row2-row10.945060.77
Var 12h NI row2-row11.016821
Var 36h I row2-row11.191040.601
Var 36h NI row2-row10.946580.469
Var 60h I row2-row10.82550.374
Var 60h NI row2-row10.846560.63
Time course 0hI-0hNI1.078750.63
Time course 12hI-12hNI1.01490.827
Time course 36hI-36hNI1.378260.007
Time course 60hI-60hNI1.782750.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.176240.431
transgenic ySAMdc/azygous control (breaker)1.096461
transgenic ySAMdc/azygous control (red)1.178760.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.085550.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.915450.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.175880.14
Manapal/WT (break)0.977271
Manapal/WT (red)0.946040.424