Expression of 1-1-7.1.12.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.851240.318
27DAP/17DAP0.879140.72
39DAP/27DAP1.752420.07
41DAP/39DAP0.737930.21
42DAP/41DAP1.30070.773
43DAP/42DAP1.033841
47DAP/43DAP0.752870.269
52DAP/47DAP0.909190.729
57DAP/52DAP1.068390.839

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.365650.089
17DAP/reference0.999610.904
27DAP/reference0.854570.134
39DAP/reference1.034190.828
41DAP/reference0.958770.542
42DAP/reference1.283450.002
43DAP/reference1.311430.009
47DAP/reference1.145920.069
52DAP/reference1.053420.371
57DAP/reference1.175160.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.087440.398
27DAP/17DAP0.962120.821
39DAP/27DAP0.976930.812
41DAP/39DAP1.17190.827
42DAP/41DAP0.982360.777
43DAP/42DAP0.843640.032
47DAP/43DAP1.03520.833
52DAP/47DAP0.784960.1
57DAP/52DAP0.849090.326
57DAP/7DAP0.906351

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.357830.033
17DAP/reference1.312440.006
27DAP/reference1.572960.007
39DAP/reference1.557170.006
41DAP/reference1.54040.009
42DAP/reference1.658570.016
43DAP/reference1.363940.011
47DAP/reference1.33180.015
52DAP/reference1.84280.007
57DAP/reference1.604370.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046860.894
17DAP/reference1.072570.348
27DAP/reference1.221630.292
39DAP/reference1.08490.556
41DAP/reference1.223220.028
42DAP/reference1.31920.018
43DAP/reference1.035740.761
47DAP/reference1.537340.01
52DAP/reference0.826340.02
57DAP/reference1.010210.789

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.373910.039
17DAP/reference1.179040.241
27DAP/reference1.211180.025
39DAP/reference1.532790.006
41DAP/reference1.363870.007
42DAP/reference1.519880.016
43DAP/reference1.547490.007
47DAP/reference0.952090.383
52DAP/reference1.372720.049
57DAP/reference1.041060.758

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.910760.961
26DAP/20DAP1.515080.101
34DAP/26DAP0.892160.596
51DAP/34DAP0.890850.513
52DAP/51DAP0.836361
53DAP/52DAP0.998821
55DAP/53DAP0.773470.023
57DAP/55DAP1.297230.793
62DAP/57DAP0.967410.994
68DAP/62DAP1.282780.573
68DAP/14DAP1.061770.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.296290.025

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.013151
Mature Green Tomato/Ripe Tomato1.357760.02
Immature Eggplant/Mature Eggplant1.128890.142
Ripe Pepper/Ripe Tomato1.023611
Mature Eggplant/Ripe Tomato0.949361

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.94760.944
1-1-2/M821.142891
12-2/M820.791730.862
12-4/M820.904071
1-3/M821.617960.26
2-1-1/M820.963851
2-1/M820.813630.74
2-6/M821.15980.425
3-2/M820.77061
4-1-1/M821.256371
4-1/M821.243641
4-3-2/M821.40640.508
4-3/M821.127551
5-3/M821.221810.427
6-2/M821.085871
6-3/M821.097911
7-1/M820.806110.803
7-2/M821.19430.385
9-3-2/M821.26291

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.947951
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.207731
IL12-4/WTpooled0.823150.581
IL1-4/WTpooled1.181860.426
WT/WTpooled1.011551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.987181

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.181810.521
DC3000/delta hrp 6h0.981730.95
DC3000/delta hrp 12h0.986251
DC3000/delta hrp 24h1.26230.118

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.069630.408
DC3000 delta B/DC3000 delta AB1.132320.412

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.941411
Exp 36h1.345420.693
Exp 60h1.106061

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018391
Var 0h1.003011
Var 12h I row2-row11.482830.654
Var 12h NI row2-row11.109731
Var 36h I row2-row11.175930.309
Var 36h NI row2-row10.90090.706
Var 60h I row2-row10.906170.952
Var 60h NI row2-row10.803880.292
Time course 0hI-0hNI0.872230.168
Time course 12hI-12hNI1.052910.55
Time course 36hI-36hNI1.306160.101
Time course 60hI-60hNI1.451770.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.02520.455
transgenic ySAMdc/azygous control (breaker)1.174781
transgenic ySAMdc/azygous control (red)1.151620.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.148730.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.045141

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.867551
Manapal/WT (break)1.171861
Manapal/WT (red)1.089120.413