Expression of 1-1-7.1.12.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85124 | 0.318 |
27DAP/17DAP | 0.87914 | 0.72 |
39DAP/27DAP | 1.75242 | 0.07 |
41DAP/39DAP | 0.73793 | 0.21 |
42DAP/41DAP | 1.3007 | 0.773 |
43DAP/42DAP | 1.03384 | 1 |
47DAP/43DAP | 0.75287 | 0.269 |
52DAP/47DAP | 0.90919 | 0.729 |
57DAP/52DAP | 1.06839 | 0.839 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36565 | 0.089 |
17DAP/reference | 0.99961 | 0.904 |
27DAP/reference | 0.85457 | 0.134 |
39DAP/reference | 1.03419 | 0.828 |
41DAP/reference | 0.95877 | 0.542 |
42DAP/reference | 1.28345 | 0.002 |
43DAP/reference | 1.31143 | 0.009 |
47DAP/reference | 1.14592 | 0.069 |
52DAP/reference | 1.05342 | 0.371 |
57DAP/reference | 1.17516 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08744 | 0.398 |
27DAP/17DAP | 0.96212 | 0.821 |
39DAP/27DAP | 0.97693 | 0.812 |
41DAP/39DAP | 1.1719 | 0.827 |
42DAP/41DAP | 0.98236 | 0.777 |
43DAP/42DAP | 0.84364 | 0.032 |
47DAP/43DAP | 1.0352 | 0.833 |
52DAP/47DAP | 0.78496 | 0.1 |
57DAP/52DAP | 0.84909 | 0.326 |
57DAP/7DAP | 0.90635 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35783 | 0.033 |
17DAP/reference | 1.31244 | 0.006 |
27DAP/reference | 1.57296 | 0.007 |
39DAP/reference | 1.55717 | 0.006 |
41DAP/reference | 1.5404 | 0.009 |
42DAP/reference | 1.65857 | 0.016 |
43DAP/reference | 1.36394 | 0.011 |
47DAP/reference | 1.3318 | 0.015 |
52DAP/reference | 1.8428 | 0.007 |
57DAP/reference | 1.60437 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04686 | 0.894 |
17DAP/reference | 1.07257 | 0.348 |
27DAP/reference | 1.22163 | 0.292 |
39DAP/reference | 1.0849 | 0.556 |
41DAP/reference | 1.22322 | 0.028 |
42DAP/reference | 1.3192 | 0.018 |
43DAP/reference | 1.03574 | 0.761 |
47DAP/reference | 1.53734 | 0.01 |
52DAP/reference | 0.82634 | 0.02 |
57DAP/reference | 1.01021 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37391 | 0.039 |
17DAP/reference | 1.17904 | 0.241 |
27DAP/reference | 1.21118 | 0.025 |
39DAP/reference | 1.53279 | 0.006 |
41DAP/reference | 1.36387 | 0.007 |
42DAP/reference | 1.51988 | 0.016 |
43DAP/reference | 1.54749 | 0.007 |
47DAP/reference | 0.95209 | 0.383 |
52DAP/reference | 1.37272 | 0.049 |
57DAP/reference | 1.04106 | 0.758 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91076 | 0.961 |
26DAP/20DAP | 1.51508 | 0.101 |
34DAP/26DAP | 0.89216 | 0.596 |
51DAP/34DAP | 0.89085 | 0.513 |
52DAP/51DAP | 0.83636 | 1 |
53DAP/52DAP | 0.99882 | 1 |
55DAP/53DAP | 0.77347 | 0.023 |
57DAP/55DAP | 1.29723 | 0.793 |
62DAP/57DAP | 0.96741 | 0.994 |
68DAP/62DAP | 1.28278 | 0.573 |
68DAP/14DAP | 1.06177 | 0.826 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.29629 | 0.025 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.01315 | 1 |
Mature Green Tomato/Ripe Tomato | 1.35776 | 0.02 |
Immature Eggplant/Mature Eggplant | 1.12889 | 0.142 |
Ripe Pepper/Ripe Tomato | 1.02361 | 1 |
Mature Eggplant/Ripe Tomato | 0.94936 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9476 | 0.944 |
1-1-2/M82 | 1.14289 | 1 |
12-2/M82 | 0.79173 | 0.862 |
12-4/M82 | 0.90407 | 1 |
1-3/M82 | 1.61796 | 0.26 |
2-1-1/M82 | 0.96385 | 1 |
2-1/M82 | 0.81363 | 0.74 |
2-6/M82 | 1.1598 | 0.425 |
3-2/M82 | 0.77061 | |
4-1-1/M82 | 1.25637 | 1 |
4-1/M82 | 1.24364 | 1 |
4-3-2/M82 | 1.4064 | 0.508 |
4-3/M82 | 1.12755 | 1 |
5-3/M82 | 1.22181 | 0.427 |
6-2/M82 | 1.08587 | 1 |
6-3/M82 | 1.09791 | 1 |
7-1/M82 | 0.80611 | 0.803 |
7-2/M82 | 1.1943 | 0.385 |
9-3-2/M82 | 1.2629 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.94795 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.20773 | 1 |
IL12-4/WTpooled | 0.82315 | 0.581 |
IL1-4/WTpooled | 1.18186 | 0.426 |
WT/WTpooled | 1.01155 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98718 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.18181 | 0.521 |
DC3000/delta hrp 6h | 0.98173 | 0.95 |
DC3000/delta hrp 12h | 0.98625 | 1 |
DC3000/delta hrp 24h | 1.2623 | 0.118 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06963 | 0.408 |
DC3000 delta B/DC3000 delta AB | 1.13232 | 0.412 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94141 | 1 |
Exp 36h | 1.34542 | 0.693 |
Exp 60h | 1.10606 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01839 | 1 |
Var 0h | 1.00301 | 1 |
Var 12h I row2-row1 | 1.48283 | 0.654 |
Var 12h NI row2-row1 | 1.10973 | 1 |
Var 36h I row2-row1 | 1.17593 | 0.309 |
Var 36h NI row2-row1 | 0.9009 | 0.706 |
Var 60h I row2-row1 | 0.90617 | 0.952 |
Var 60h NI row2-row1 | 0.80388 | 0.292 |
Time course 0hI-0hNI | 0.87223 | 0.168 |
Time course 12hI-12hNI | 1.05291 | 0.55 |
Time course 36hI-36hNI | 1.30616 | 0.101 |
Time course 60hI-60hNI | 1.45177 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0252 | 0.455 |
transgenic ySAMdc/azygous control (breaker) | 1.17478 | 1 |
transgenic ySAMdc/azygous control (red) | 1.15162 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.14873 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04514 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86755 | 1 |
Manapal/WT (break) | 1.17186 | 1 |
Manapal/WT (red) | 1.08912 | 0.413 |
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