Expression of 1-1-7.1.12.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.30594 | 0.452 |
27DAP/17DAP | 1.03486 | 0.92 |
39DAP/27DAP | 1.29264 | 0.449 |
41DAP/39DAP | 0.83464 | 0.389 |
42DAP/41DAP | 1.18805 | 0.773 |
43DAP/42DAP | 0.90303 | 0.767 |
47DAP/43DAP | 1.03328 | 0.889 |
52DAP/47DAP | 0.87744 | 0.654 |
57DAP/52DAP | 1.02631 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28746 | 0.278 |
17DAP/reference | 1.27954 | 0.048 |
27DAP/reference | 1.34512 | 0.339 |
39DAP/reference | 1.21023 | 0.106 |
41DAP/reference | 1.45327 | 0.054 |
42DAP/reference | 1.0656 | 0.995 |
43DAP/reference | 1.06024 | 0.866 |
47DAP/reference | 1.02377 | 0.568 |
52DAP/reference | 1.03615 | 0.878 |
57DAP/reference | 1.03145 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09841 | 0.205 |
27DAP/17DAP | 1.04525 | 0.826 |
39DAP/27DAP | 1.06203 | 0.565 |
41DAP/39DAP | 1.13758 | 0.663 |
42DAP/41DAP | 0.95582 | 0.63 |
43DAP/42DAP | 0.95249 | 0.367 |
47DAP/43DAP | 1.00547 | 0.957 |
52DAP/47DAP | 0.97721 | 0.886 |
57DAP/52DAP | 0.86515 | 0.241 |
57DAP/7DAP | 1.02319 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97388 | 0.55 |
17DAP/reference | 0.92892 | 0.253 |
27DAP/reference | 0.87383 | 0.088 |
39DAP/reference | 0.82204 | 0.064 |
41DAP/reference | 0.93559 | 0.311 |
42DAP/reference | 0.99608 | 0.675 |
43DAP/reference | 0.98335 | 0.527 |
47DAP/reference | 0.87824 | 0.168 |
52DAP/reference | 1.14287 | 0.459 |
57DAP/reference | 1.01126 | 0.831 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7884 | 0.093 |
17DAP/reference | 1.02382 | 0.924 |
27DAP/reference | 1.3935 | 0.562 |
39DAP/reference | 0.92995 | 0.428 |
41DAP/reference | 1.12934 | 0.525 |
42DAP/reference | 1.09249 | 0.596 |
43DAP/reference | 1.08279 | 0.447 |
47DAP/reference | 1.0899 | 0.482 |
52DAP/reference | 1.14677 | 0.747 |
57DAP/reference | 1.12622 | 0.93 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02235 | 0.699 |
17DAP/reference | 1.19446 | 0.427 |
27DAP/reference | 0.85912 | 0.184 |
39DAP/reference | 1.09505 | 0.67 |
41DAP/reference | 0.98309 | 0.682 |
42DAP/reference | 0.80897 | 0.059 |
43DAP/reference | 0.89595 | 0.281 |
47DAP/reference | 1.12613 | 0.63 |
52DAP/reference | 1.02477 | 0.965 |
57DAP/reference | 0.92402 | 0.31 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.48518 | |
26DAP/20DAP | 1.25261 | 0.226 |
34DAP/26DAP | 0.98548 | 0.991 |
51DAP/34DAP | 1.00217 | 0.993 |
52DAP/51DAP | 0.94949 | 1 |
53DAP/52DAP | 1.1102 | 0.384 |
55DAP/53DAP | 0.88031 | 0.106 |
57DAP/55DAP | 1.14031 | 0.407 |
62DAP/57DAP | 1.07398 | 0.833 |
68DAP/62DAP | 0.896 | 0.378 |
68DAP/14DAP | 1.0304 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.1703 | 0.264 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.53393 | 0.149 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.1255 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.04243 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.06547 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.48037 | 0.283 |
4-3-2/M82 | 1.0337 | 0.508 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.07791 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.21514 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98504 | |
IL12-4/WTpooled | 0.79115 | |
IL1-4/WTpooled | 1.56053 | 0.426 |
WT/WTpooled | 1.06168 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09077 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.21171 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.14583 | 1 |
DC3000/delta hrp 24h | 1.05062 | 0.821 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.88009 | 0.11 |
DC3000 delta B/DC3000 delta AB | 0.99313 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1036 | 1 |
Exp 36h | 0.76658 | 0.661 |
Exp 60h | 0.7431 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0094 | 1 |
Var 0h | 1.066 | 1 |
Var 12h I row2-row1 | 0.83886 | 0.327 |
Var 12h NI row2-row1 | 0.95958 | 0.627 |
Var 36h I row2-row1 | 1.0152 | 1 |
Var 36h NI row2-row1 | 0.98749 | 0.852 |
Var 60h I row2-row1 | 1.03514 | 1 |
Var 60h NI row2-row1 | 1.06969 | 1 |
Time course 0hI-0hNI | 1.02509 | 0.867 |
Time course 12hI-12hNI | 1.00804 | 0.888 |
Time course 36hI-36hNI | 1.06368 | 0.316 |
Time course 60hI-60hNI | 1.13938 | 0.08 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.88696 | 0.12 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.70265 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.00778 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 2.58736 | 0.164 |
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