Expression of 1-1-7.1.12.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.305940.452
27DAP/17DAP1.034860.92
39DAP/27DAP1.292640.449
41DAP/39DAP0.834640.389
42DAP/41DAP1.188050.773
43DAP/42DAP0.903030.767
47DAP/43DAP1.033280.889
52DAP/47DAP0.877440.654
57DAP/52DAP1.026311

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.287460.278
17DAP/reference1.279540.048
27DAP/reference1.345120.339
39DAP/reference1.210230.106
41DAP/reference1.453270.054
42DAP/reference1.06560.995
43DAP/reference1.060240.866
47DAP/reference1.023770.568
52DAP/reference1.036150.878
57DAP/reference1.031451

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.098410.205
27DAP/17DAP1.045250.826
39DAP/27DAP1.062030.565
41DAP/39DAP1.137580.663
42DAP/41DAP0.955820.63
43DAP/42DAP0.952490.367
47DAP/43DAP1.005470.957
52DAP/47DAP0.977210.886
57DAP/52DAP0.865150.241
57DAP/7DAP1.023191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.973880.55
17DAP/reference0.928920.253
27DAP/reference0.873830.088
39DAP/reference0.822040.064
41DAP/reference0.935590.311
42DAP/reference0.996080.675
43DAP/reference0.983350.527
47DAP/reference0.878240.168
52DAP/reference1.142870.459
57DAP/reference1.011260.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.78840.093
17DAP/reference1.023820.924
27DAP/reference1.39350.562
39DAP/reference0.929950.428
41DAP/reference1.129340.525
42DAP/reference1.092490.596
43DAP/reference1.082790.447
47DAP/reference1.08990.482
52DAP/reference1.146770.747
57DAP/reference1.126220.93

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.022350.699
17DAP/reference1.194460.427
27DAP/reference0.859120.184
39DAP/reference1.095050.67
41DAP/reference0.983090.682
42DAP/reference0.808970.059
43DAP/reference0.895950.281
47DAP/reference1.126130.63
52DAP/reference1.024770.965
57DAP/reference0.924020.31

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.48518
26DAP/20DAP1.252610.226
34DAP/26DAP0.985480.991
51DAP/34DAP1.002170.993
52DAP/51DAP0.949491
53DAP/52DAP1.11020.384
55DAP/53DAP0.880310.106
57DAP/55DAP1.140310.407
62DAP/57DAP1.073980.833
68DAP/62DAP0.8960.378
68DAP/14DAP1.03041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.17030.264

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.533930.149
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.1255
12-2/M82N/AN/A
12-4/M821.04243
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.06547
4-1-1/M82N/AN/A
4-1/M821.480370.283
4-3-2/M821.03370.508
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.07791
7-2/M82N/AN/A
9-3-2/M821.215141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.98504
IL12-4/WTpooled0.79115
IL1-4/WTpooled1.560530.426
WT/WTpooled1.061681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.090770.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.211710.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.145831
DC3000/delta hrp 24h1.050620.821

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.880090.11
DC3000 delta B/DC3000 delta AB0.993131

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.10361
Exp 36h0.766580.661
Exp 60h0.74310.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.00941
Var 0h1.0661
Var 12h I row2-row10.838860.327
Var 12h NI row2-row10.959580.627
Var 36h I row2-row11.01521
Var 36h NI row2-row10.987490.852
Var 60h I row2-row11.035141
Var 60h NI row2-row11.069691
Time course 0hI-0hNI1.025090.867
Time course 12hI-12hNI1.008040.888
Time course 36hI-36hNI1.063680.316
Time course 60hI-60hNI1.139380.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.886960.12

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.702650.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.007781
Manapal/WT (break)N/AN/A
Manapal/WT (red)2.587360.164