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Expression of 1-1-7.1.13.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.379940.381
27DAP/17DAP1.133910.842
39DAP/27DAP2.029060.168
41DAP/39DAP0.91840.638
42DAP/41DAP0.795550.774
43DAP/42DAP1.102771
47DAP/43DAP0.807840.424
52DAP/47DAP1.77090.268
57DAP/52DAP1.107330.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.943710.217
17DAP/reference0.882110.158
27DAP/reference0.995590.847
39DAP/reference0.903260.412
41DAP/reference0.935190.154
42DAP/reference1.215550.003
43DAP/reference1.124420.025
47DAP/reference0.966610.242
52DAP/reference1.024891
57DAP/reference1.024080.724

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.980490.697
27DAP/17DAP1.010870.96
39DAP/27DAP1.004240.854
41DAP/39DAP0.958420.875
42DAP/41DAP1.111040.526
43DAP/42DAP1.01342N/A
47DAP/43DAP1.012130.95
52DAP/47DAP0.964350.905
57DAP/52DAP1.006571
57DAP/7DAP1.042071

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016340.758
17DAP/reference0.860620.072
27DAP/reference1.095360.453
39DAP/reference0.833830.043
41DAP/reference0.966790.412
42DAP/reference1.093930.534
43DAP/reference0.762660.018
47DAP/reference1.325780.48
52DAP/reference0.767140.015
57DAP/reference0.626030.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.990890.848
17DAP/reference0.908220.143
27DAP/reference1.238640.118
39DAP/reference0.910760.067
41DAP/reference1.064320.599
42DAP/reference1.09510.433
43DAP/reference1.104391
47DAP/reference0.955080.092
52DAP/reference0.756560.004
57DAP/reference0.680980.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.860930.068
17DAP/reference0.839210.092
27DAP/reference0.991760.624
39DAP/reference0.936950.271
41DAP/reference1.109440.134
42DAP/reference1.268890.041
43DAP/reference1.131710.935
47DAP/reference0.877440.12
52DAP/reference0.935120.433
57DAP/reference0.957880.416

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.943251
26DAP/20DAP1.079630.663
34DAP/26DAP0.95170.584
51DAP/34DAP1.166530.064
52DAP/51DAP0.975381
53DAP/52DAP1.068140.797
55DAP/53DAP0.890230.037
57DAP/55DAP0.987690.925
62DAP/57DAP0.85360.681
68DAP/62DAP1.134950.565
68DAP/14DAP1.243510.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.850890.03

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.596470.131
Mature Green Tomato/Ripe Tomato0.694090.165
Immature Eggplant/Mature Eggplant1.923260.05
Ripe Pepper/Ripe Tomato0.802920.293
Mature Eggplant/Ripe Tomato0.429881

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.954740.944
1-1-2/M821.0969N/A
12-2/M820.993591
12-4/M820.972880.619
1-3/M821.061421
2-1-1/M820.864320.565
2-1/M820.946641
2-6/M820.909561
3-2/M820.959790.414
4-1-1/M820.986591
4-1/M820.920941
4-3-2/M821.022011
4-3/M820.932040.72
5-3/M820.946850.642
6-2/M821.004381
6-3/M820.978951
7-1/M821.037041
7-2/M820.974010.881
9-3-2/M821.292361

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.118220.365
IL2-6/WTpooled1.13470.419
IL7-5/WTpooled0.588971
IL7-3/WTpooled0.962941
IL12-4/WTpooled1.022620.737
IL1-4/WTpooled1.11651
WT/WTpooled1.026581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.466590.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.032180.875
DC3000/delta hrp 6h0.941320.95
DC3000/delta hrp 12h1.000651
DC3000/delta hrp 24h1.050890.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.03980.29
DC3000 delta B/DC3000 delta AB0.988810.936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.262641
Exp 36h1.321361
Exp 60h1.395940.215

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008561
Var 0h0.518741
Var 12h I row2-row11.124960.283
Var 12h NI row2-row11.050211
Var 36h I row2-row11.143491
Var 36h NI row2-row11.034931
Var 60h I row2-row11.107061
Var 60h NI row2-row11.069591
Time course 0hI-0hNI1.072690.719
Time course 12hI-12hNI1.066450.603
Time course 36hI-36hNI0.972710.418
Time course 60hI-60hNI1.531280.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.110350.571
transgenic ySAMdc/azygous control (breaker)0.976310.49
transgenic ySAMdc/azygous control (red)0.980171

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.185790.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.944080.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.074520.307
Manapal/WT (break)1.039320.381
Manapal/WT (red)1.011421