Expression of 1-1-7.1.13.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.036320.893
27DAP/17DAP1.075750.877
39DAP/27DAP0.888180.564
41DAP/39DAP1.126930.638
42DAP/41DAP1.35520.696
43DAP/42DAP0.891610.551
47DAP/43DAP0.98950.92
52DAP/47DAP1.084910.883
57DAP/52DAP1.146190.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.059960.522
17DAP/reference1.050510.342
27DAP/reference1.043690.264
39DAP/reference1.020290.691
41DAP/reference1.063760.365
42DAP/reference0.954010.069
43DAP/reference0.977430.675
47DAP/reference0.904720.009
52DAP/reference0.821440.071
57DAP/reference0.864910.074

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.023420.708
27DAP/17DAP1.022190.915
39DAP/27DAP1.023650.677
41DAP/39DAP1.080430.807
42DAP/41DAP1.008971
43DAP/42DAP0.990090.875
47DAP/43DAP0.991240.954
52DAP/47DAP1.024180.907
57DAP/52DAP1.053960.67
57DAP/7DAP1.136251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.917870.086
17DAP/reference0.943260.021
27DAP/reference0.951650.051
39DAP/reference0.973890.198
41DAP/reference0.925890.036
42DAP/reference0.917630.063
43DAP/reference0.996080.665
47DAP/reference0.94120.383
52DAP/reference0.915480.179
57DAP/reference0.93060.019

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010320.933
17DAP/reference0.938160.297
27DAP/reference0.910680.188
39DAP/reference0.915140.173
41DAP/reference0.872730.091
42DAP/reference0.95620.392
43DAP/reference0.963050.478
47DAP/reference1.067510.556
52DAP/reference0.955370.302
57DAP/reference0.991460.754

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.031161
17DAP/reference1.025510.638
27DAP/reference0.954250.097
39DAP/reference0.895580.035
41DAP/reference0.965320.019
42DAP/reference0.949530.361
43DAP/reference0.932330.334
47DAP/reference0.94590.335
52DAP/reference0.971690.623
57DAP/reference0.761520.027

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.005640.966
26DAP/20DAP0.944870.512
34DAP/26DAP0.980010.972
51DAP/34DAP0.892610.311
52DAP/51DAP0.998461
53DAP/52DAP0.983920.902
55DAP/53DAP0.967290.686
57DAP/55DAP1.178510.666
62DAP/57DAP0.998241
68DAP/62DAP1.009090.834
68DAP/14DAP0.830440.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.950040.52

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.214520.075
Mature Green Tomato/Ripe Tomato0.855850.347
Immature Eggplant/Mature Eggplant1.158710.348
Ripe Pepper/Ripe Tomato1.55279
Mature Eggplant/Ripe Tomato1.787310.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.960340.944
1-1-2/M820.822881
12-2/M820.995811
12-4/M820.969841
1-3/M820.993041
2-1-1/M821.074380.764
2-1/M821.590991
2-6/M820.899151
3-2/M821.001411
4-1-1/M821.004681
4-1/M820.661671
4-3-2/M821.052811
4-3/M821.121851
5-3/M821.046641
6-2/M821.054121
6-3/M821.014541
7-1/M821.041751
7-2/M821.004111
9-3-2/M820.935491

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.700020.493
IL2-6/WTpooled1.12310.788
IL7-5/WTpooled1.34081
IL7-3/WTpooled1.104281
IL12-4/WTpooled1.2980.532
IL1-4/WTpooled1.296641
WT/WTpooled0.966251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.124171

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.107490.921
DC3000/delta hrp 6h1.057331
DC3000/delta hrp 12h1.354621
DC3000/delta hrp 24h1.024360.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.08880.087
DC3000 delta B/DC3000 delta AB1.010890.771

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.047251
Var 0h1.019591
Var 12h I row2-row11.207910.204
Var 12h NI row2-row10.969220.906
Var 36h I row2-row11.23770.908
Var 36h NI row2-row10.861730.549
Var 60h I row2-row11.182930.562
Var 60h NI row2-row11.078431
Time course 0hI-0hNI1.168330.603
Time course 12hI-12hNI1.022730.811
Time course 36hI-36hNI0.999920.857
Time course 60hI-60hNI1.187770.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.843580.338
transgenic ySAMdc/azygous control (breaker)1.150740.248
transgenic ySAMdc/azygous control (red)0.892721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.034020.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.004031

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.765871
Manapal/WT (break)0.910641
Manapal/WT (red)0.741870.199