Expression of 1-1-7.1.13.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03632 | 0.893 |
27DAP/17DAP | 1.07575 | 0.877 |
39DAP/27DAP | 0.88818 | 0.564 |
41DAP/39DAP | 1.12693 | 0.638 |
42DAP/41DAP | 1.3552 | 0.696 |
43DAP/42DAP | 0.89161 | 0.551 |
47DAP/43DAP | 0.9895 | 0.92 |
52DAP/47DAP | 1.08491 | 0.883 |
57DAP/52DAP | 1.14619 | 0.964 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05996 | 0.522 |
17DAP/reference | 1.05051 | 0.342 |
27DAP/reference | 1.04369 | 0.264 |
39DAP/reference | 1.02029 | 0.691 |
41DAP/reference | 1.06376 | 0.365 |
42DAP/reference | 0.95401 | 0.069 |
43DAP/reference | 0.97743 | 0.675 |
47DAP/reference | 0.90472 | 0.009 |
52DAP/reference | 0.82144 | 0.071 |
57DAP/reference | 0.86491 | 0.074 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02342 | 0.708 |
27DAP/17DAP | 1.02219 | 0.915 |
39DAP/27DAP | 1.02365 | 0.677 |
41DAP/39DAP | 1.08043 | 0.807 |
42DAP/41DAP | 1.00897 | 1 |
43DAP/42DAP | 0.99009 | 0.875 |
47DAP/43DAP | 0.99124 | 0.954 |
52DAP/47DAP | 1.02418 | 0.907 |
57DAP/52DAP | 1.05396 | 0.67 |
57DAP/7DAP | 1.13625 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91787 | 0.086 |
17DAP/reference | 0.94326 | 0.021 |
27DAP/reference | 0.95165 | 0.051 |
39DAP/reference | 0.97389 | 0.198 |
41DAP/reference | 0.92589 | 0.036 |
42DAP/reference | 0.91763 | 0.063 |
43DAP/reference | 0.99608 | 0.665 |
47DAP/reference | 0.9412 | 0.383 |
52DAP/reference | 0.91548 | 0.179 |
57DAP/reference | 0.9306 | 0.019 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01032 | 0.933 |
17DAP/reference | 0.93816 | 0.297 |
27DAP/reference | 0.91068 | 0.188 |
39DAP/reference | 0.91514 | 0.173 |
41DAP/reference | 0.87273 | 0.091 |
42DAP/reference | 0.9562 | 0.392 |
43DAP/reference | 0.96305 | 0.478 |
47DAP/reference | 1.06751 | 0.556 |
52DAP/reference | 0.95537 | 0.302 |
57DAP/reference | 0.99146 | 0.754 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03116 | 1 |
17DAP/reference | 1.02551 | 0.638 |
27DAP/reference | 0.95425 | 0.097 |
39DAP/reference | 0.89558 | 0.035 |
41DAP/reference | 0.96532 | 0.019 |
42DAP/reference | 0.94953 | 0.361 |
43DAP/reference | 0.93233 | 0.334 |
47DAP/reference | 0.9459 | 0.335 |
52DAP/reference | 0.97169 | 0.623 |
57DAP/reference | 0.76152 | 0.027 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00564 | 0.966 |
26DAP/20DAP | 0.94487 | 0.512 |
34DAP/26DAP | 0.98001 | 0.972 |
51DAP/34DAP | 0.89261 | 0.311 |
52DAP/51DAP | 0.99846 | 1 |
53DAP/52DAP | 0.98392 | 0.902 |
55DAP/53DAP | 0.96729 | 0.686 |
57DAP/55DAP | 1.17851 | 0.666 |
62DAP/57DAP | 0.99824 | 1 |
68DAP/62DAP | 1.00909 | 0.834 |
68DAP/14DAP | 0.83044 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95004 | 0.52 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.21452 | 0.075 |
Mature Green Tomato/Ripe Tomato | 0.85585 | 0.347 |
Immature Eggplant/Mature Eggplant | 1.15871 | 0.348 |
Ripe Pepper/Ripe Tomato | 1.55279 | |
Mature Eggplant/Ripe Tomato | 1.78731 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96034 | 0.944 |
1-1-2/M82 | 0.82288 | 1 |
12-2/M82 | 0.99581 | 1 |
12-4/M82 | 0.96984 | 1 |
1-3/M82 | 0.99304 | 1 |
2-1-1/M82 | 1.07438 | 0.764 |
2-1/M82 | 1.59099 | 1 |
2-6/M82 | 0.89915 | 1 |
3-2/M82 | 1.00141 | 1 |
4-1-1/M82 | 1.00468 | 1 |
4-1/M82 | 0.66167 | 1 |
4-3-2/M82 | 1.05281 | 1 |
4-3/M82 | 1.12185 | 1 |
5-3/M82 | 1.04664 | 1 |
6-2/M82 | 1.05412 | 1 |
6-3/M82 | 1.01454 | 1 |
7-1/M82 | 1.04175 | 1 |
7-2/M82 | 1.00411 | 1 |
9-3-2/M82 | 0.93549 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.70002 | 0.493 |
IL2-6/WTpooled | 1.1231 | 0.788 |
IL7-5/WTpooled | 1.34081 | |
IL7-3/WTpooled | 1.10428 | 1 |
IL12-4/WTpooled | 1.298 | 0.532 |
IL1-4/WTpooled | 1.29664 | 1 |
WT/WTpooled | 0.96625 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12417 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10749 | 0.921 |
DC3000/delta hrp 6h | 1.05733 | 1 |
DC3000/delta hrp 12h | 1.35462 | 1 |
DC3000/delta hrp 24h | 1.02436 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0888 | 0.087 |
DC3000 delta B/DC3000 delta AB | 1.01089 | 0.771 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04725 | 1 |
Var 0h | 1.01959 | 1 |
Var 12h I row2-row1 | 1.20791 | 0.204 |
Var 12h NI row2-row1 | 0.96922 | 0.906 |
Var 36h I row2-row1 | 1.2377 | 0.908 |
Var 36h NI row2-row1 | 0.86173 | 0.549 |
Var 60h I row2-row1 | 1.18293 | 0.562 |
Var 60h NI row2-row1 | 1.07843 | 1 |
Time course 0hI-0hNI | 1.16833 | 0.603 |
Time course 12hI-12hNI | 1.02273 | 0.811 |
Time course 36hI-36hNI | 0.99992 | 0.857 |
Time course 60hI-60hNI | 1.18777 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84358 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.15074 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.89272 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03402 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00403 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76587 | 1 |
Manapal/WT (break) | 0.91064 | 1 |
Manapal/WT (red) | 0.74187 | 0.199 |
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