Expression of 1-1-7.1.14.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22603 | 0.485 |
27DAP/17DAP | 0.93328 | 0.879 |
39DAP/27DAP | 0.79202 | 0.328 |
41DAP/39DAP | 0.841 | 0.422 |
42DAP/41DAP | 1.04626 | 0.994 |
43DAP/42DAP | 1.26106 | 0.861 |
47DAP/43DAP | 0.91655 | 0.693 |
52DAP/47DAP | 0.76484 | 0.45 |
57DAP/52DAP | 1.08605 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54423 | 0.013 |
17DAP/reference | 1.45292 | 0.074 |
27DAP/reference | 1.59838 | 0.018 |
39DAP/reference | 1.58798 | 0.214 |
41DAP/reference | 1.42547 | 0.043 |
42DAP/reference | 1.14783 | 0.013 |
43DAP/reference | 0.86312 | 0.019 |
47DAP/reference | 0.79592 | 0.013 |
52DAP/reference | 0.58452 | 0.012 |
57DAP/reference | 0.62623 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25981 | 0.053 |
27DAP/17DAP | 0.92541 | 0.508 |
39DAP/27DAP | 0.7032 | 0.035 |
41DAP/39DAP | 0.9518 | 0.885 |
42DAP/41DAP | 1.03833 | 0.879 |
43DAP/42DAP | 0.80353 | 0.026 |
47DAP/43DAP | 0.76844 | 0.01 |
52DAP/47DAP | 0.93553 | 0.801 |
57DAP/52DAP | 0.82457 | 0.391 |
57DAP/7DAP | 0.4492 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.74252 | 0.027 |
17DAP/reference | 1.51167 | 0.007 |
27DAP/reference | 1.03994 | 0.551 |
39DAP/reference | 1.45488 | 0.018 |
41DAP/reference | 0.83477 | 0.111 |
42DAP/reference | 0.9832 | 0.531 |
43DAP/reference | 0.91429 | 0.202 |
47DAP/reference | 0.94173 | 0.504 |
52DAP/reference | 0.99659 | 0.621 |
57DAP/reference | 1.17284 | 0.076 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1028 | 0.695 |
17DAP/reference | 1.4686 | 0.063 |
27DAP/reference | 1.23166 | 0.072 |
39DAP/reference | 0.96439 | 0.348 |
41DAP/reference | 0.87319 | 0.105 |
42DAP/reference | 1.04 | 0.987 |
43DAP/reference | 0.91235 | 0.307 |
47DAP/reference | 0.99863 | 0.59 |
52DAP/reference | 0.71928 | 0.005 |
57DAP/reference | 0.57513 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.09343 | 0.015 |
17DAP/reference | 1.95756 | 0.1 |
27DAP/reference | 1.84682 | 0.018 |
39DAP/reference | 2.02161 | 0.006 |
41DAP/reference | 1.61 | 0.009 |
42DAP/reference | 1.27052 | 0.089 |
43DAP/reference | 1.32648 | 0.037 |
47DAP/reference | 1.19903 | 0.093 |
52DAP/reference | 1.06694 | 1 |
57DAP/reference | 1.49663 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.76933 | 0.355 |
26DAP/20DAP | 1.05032 | 1 |
34DAP/26DAP | 1.23526 | 1 |
51DAP/34DAP | 0.82576 | 0.513 |
52DAP/51DAP | 0.86497 | 1 |
53DAP/52DAP | 1.00404 | 1 |
55DAP/53DAP | 0.82721 | 0.024 |
57DAP/55DAP | 1.15401 | 0.793 |
62DAP/57DAP | 0.98555 | 0.994 |
68DAP/62DAP | 0.75036 | 0.505 |
68DAP/14DAP | 0.64695 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.00672 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.89025 | 0.058 |
Mature Green Tomato/Ripe Tomato | 7.76692 | 0.017 |
Immature Eggplant/Mature Eggplant | 0.52146 | 0.062 |
Ripe Pepper/Ripe Tomato | 1.12844 | 1 |
Mature Eggplant/Ripe Tomato | 8.46145 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.28407 | 0.526 |
1-1-2/M82 | 1.67719 | 1 |
12-2/M82 | 0.82967 | 0.955 |
12-4/M82 | 1.09984 | 1 |
1-3/M82 | 1.24193 | 1 |
2-1-1/M82 | 0.80773 | 0.784 |
2-1/M82 | 0.60663 | 0.519 |
2-6/M82 | 1.33635 | 0.352 |
3-2/M82 | 1.08835 | 0.967 |
4-1-1/M82 | 0.7678 | 0.668 |
4-1/M82 | 0.87771 | 1 |
4-3-2/M82 | 1.68727 | 1 |
4-3/M82 | 1.31394 | 1 |
5-3/M82 | 0.85092 | 0.49 |
6-2/M82 | 0.81191 | 1 |
6-3/M82 | 1.0391 | 1 |
7-1/M82 | 0.77356 | 0.803 |
7-2/M82 | 0.87866 | 0.881 |
9-3-2/M82 | 1.69683 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.9678 | 0.321 |
IL2-6/WTpooled | 0.93283 | 1 |
IL7-5/WTpooled | 1.23623 | 0.75 |
IL7-3/WTpooled | 2.08153 | 1 |
IL12-4/WTpooled | 1.28815 | 0.503 |
IL1-4/WTpooled | 1.28692 | 1 |
WT/WTpooled | 0.98827 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97177 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9836 | 1 |
DC3000/delta hrp 6h | 0.8211 | |
DC3000/delta hrp 12h | 0.968 | 1 |
DC3000/delta hrp 24h | 0.68849 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.63962 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.63851 | 0.021 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18082 | 1 |
Exp 36h | 0.72256 | 0.589 |
Exp 60h | 0.57127 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00893 | 1 |
Var 0h | 1.01087 | 1 |
Var 12h I row2-row1 | 0.69593 | 0.338 |
Var 12h NI row2-row1 | 0.87712 | 0.349 |
Var 36h I row2-row1 | 0.93139 | 0.805 |
Var 36h NI row2-row1 | 1.24663 | 1 |
Var 60h I row2-row1 | 1.1332 | 0.543 |
Var 60h NI row2-row1 | 0.9141 | 0.932 |
Time course 0hI-0hNI | 0.99942 | 1 |
Time course 12hI-12hNI | 1.02559 | 0.836 |
Time course 36hI-36hNI | 0.86162 | 0.024 |
Time course 60hI-60hNI | 0.11623 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96273 | 0.409 |
transgenic ySAMdc/azygous control (breaker) | 1.10693 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04511 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.911 | 0.181 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.53631 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.94514 | 0.105 |
Manapal/WT (break) | 2.84588 | 0.13 |
Manapal/WT (red) | 1.33925 | 0.15 |
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