Expression of 1-1-7.1.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.226030.485
27DAP/17DAP0.933280.879
39DAP/27DAP0.792020.328
41DAP/39DAP0.8410.422
42DAP/41DAP1.046260.994
43DAP/42DAP1.261060.861
47DAP/43DAP0.916550.693
52DAP/47DAP0.764840.45
57DAP/52DAP1.086050.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.544230.013
17DAP/reference1.452920.074
27DAP/reference1.598380.018
39DAP/reference1.587980.214
41DAP/reference1.425470.043
42DAP/reference1.147830.013
43DAP/reference0.863120.019
47DAP/reference0.795920.013
52DAP/reference0.584520.012
57DAP/reference0.626230.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.259810.053
27DAP/17DAP0.925410.508
39DAP/27DAP0.70320.035
41DAP/39DAP0.95180.885
42DAP/41DAP1.038330.879
43DAP/42DAP0.803530.026
47DAP/43DAP0.768440.01
52DAP/47DAP0.935530.801
57DAP/52DAP0.824570.391
57DAP/7DAP0.44920.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.742520.027
17DAP/reference1.511670.007
27DAP/reference1.039940.551
39DAP/reference1.454880.018
41DAP/reference0.834770.111
42DAP/reference0.98320.531
43DAP/reference0.914290.202
47DAP/reference0.941730.504
52DAP/reference0.996590.621
57DAP/reference1.172840.076

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.10280.695
17DAP/reference1.46860.063
27DAP/reference1.231660.072
39DAP/reference0.964390.348
41DAP/reference0.873190.105
42DAP/reference1.040.987
43DAP/reference0.912350.307
47DAP/reference0.998630.59
52DAP/reference0.719280.005
57DAP/reference0.575130.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.093430.015
17DAP/reference1.957560.1
27DAP/reference1.846820.018
39DAP/reference2.021610.006
41DAP/reference1.610.009
42DAP/reference1.270520.089
43DAP/reference1.326480.037
47DAP/reference1.199030.093
52DAP/reference1.066941
57DAP/reference1.496630.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.769330.355
26DAP/20DAP1.050321
34DAP/26DAP1.235261
51DAP/34DAP0.825760.513
52DAP/51DAP0.864971
53DAP/52DAP1.004041
55DAP/53DAP0.827210.024
57DAP/55DAP1.154010.793
62DAP/57DAP0.985550.994
68DAP/62DAP0.750360.505
68DAP/14DAP0.64695

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.006720.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.890250.058
Mature Green Tomato/Ripe Tomato7.766920.017
Immature Eggplant/Mature Eggplant0.521460.062
Ripe Pepper/Ripe Tomato1.128441
Mature Eggplant/Ripe Tomato8.461450.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.284070.526
1-1-2/M821.677191
12-2/M820.829670.955
12-4/M821.099841
1-3/M821.241931
2-1-1/M820.807730.784
2-1/M820.606630.519
2-6/M821.336350.352
3-2/M821.088350.967
4-1-1/M820.76780.668
4-1/M820.877711
4-3-2/M821.687271
4-3/M821.313941
5-3/M820.850920.49
6-2/M820.811911
6-3/M821.03911
7-1/M820.773560.803
7-2/M820.878660.881
9-3-2/M821.696831

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.96780.321
IL2-6/WTpooled0.932831
IL7-5/WTpooled1.236230.75
IL7-3/WTpooled2.081531
IL12-4/WTpooled1.288150.503
IL1-4/WTpooled1.286921
WT/WTpooled0.988271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.971771

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.98361
DC3000/delta hrp 6h0.8211
DC3000/delta hrp 12h0.9681
DC3000/delta hrp 24h0.688490.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.639620.025
DC3000 delta B/DC3000 delta AB0.638510.021

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.180821
Exp 36h0.722560.589
Exp 60h0.571270.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008931
Var 0h1.010871
Var 12h I row2-row10.695930.338
Var 12h NI row2-row10.877120.349
Var 36h I row2-row10.931390.805
Var 36h NI row2-row11.246631
Var 60h I row2-row11.13320.543
Var 60h NI row2-row10.91410.932
Time course 0hI-0hNI0.999421
Time course 12hI-12hNI1.025590.836
Time course 36hI-36hNI0.861620.024
Time course 60hI-60hNI0.116230.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.962730.409
transgenic ySAMdc/azygous control (breaker)1.106931
transgenic ySAMdc/azygous control (red)1.045111

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.9110.181

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.536310.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.945140.105
Manapal/WT (break)2.845880.13
Manapal/WT (red)1.339250.15