Expression of 1-1-7.1.14.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.815290.103
27DAP/17DAP0.845230.611
39DAP/27DAP1.280590.38
41DAP/39DAP0.71760.075
42DAP/41DAP0.850590.774
43DAP/42DAP0.985390.932
47DAP/43DAP0.839570.504
52DAP/47DAP1.062610.918
57DAP/52DAP0.885890.692

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.179660.068
17DAP/reference0.88140.169
27DAP/reference0.84040.035
39DAP/reference0.913760.292
41DAP/reference0.886770.114
42DAP/reference1.048390.219
43DAP/reference0.934170.464
47DAP/reference0.871160.006
52DAP/reference0.787290.019
57DAP/reference0.78780.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.915410.251
27DAP/17DAP1.054880.775
39DAP/27DAP0.869150.046
41DAP/39DAP0.947480.875
42DAP/41DAP1.016040.925
43DAP/42DAP0.917320.041
47DAP/43DAP0.984590.923
52DAP/47DAP0.871640.413
57DAP/52DAP1.016011
57DAP/7DAP0.703770.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.792570.027
17DAP/reference1.451660.006
27DAP/reference1.197070.018
39DAP/reference1.082440.029
41DAP/reference1.211660.015
42DAP/reference1.202540.024
43DAP/reference1.107160.05
47DAP/reference1.113610.127
52DAP/reference1.065920.197
57DAP/reference1.026180.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.212030.099
17DAP/reference1.450190.012
27DAP/reference1.339620.083
39DAP/reference0.981290.509
41DAP/reference1.201470.046
42DAP/reference1.136940.302
43DAP/reference1.002770.863
47DAP/reference0.997430.714
52DAP/reference0.855580.007
57DAP/reference0.815150.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.485750.017
17DAP/reference1.283130.15
27DAP/reference1.234830.028
39DAP/reference1.270520.011
41DAP/reference1.018690.889
42DAP/reference1.105860.15
43DAP/reference1.059260.515
47DAP/reference0.848950.01
52DAP/reference0.973840.623
57DAP/reference0.91820.225

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.021570.966
26DAP/20DAP1.42960.147
34DAP/26DAP0.846360.147
51DAP/34DAP0.87860.323
52DAP/51DAP0.954641
53DAP/52DAP1.10090.797
55DAP/53DAP1.039920.927
57DAP/55DAP0.933310.718
62DAP/57DAP1.234130.158
68DAP/62DAP0.897780.464
68DAP/14DAP0.92951

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.914340.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.934870.577
Mature Green Tomato/Ripe Tomato1.822550.017
Immature Eggplant/Mature Eggplant1.003241
Ripe Pepper/Ripe Tomato1.231341
Mature Eggplant/Ripe Tomato1.663940.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.020641
1-1-2/M821.021641
12-2/M821.112651
12-4/M821.008761
1-3/M821.075871
2-1-1/M820.921480.565
2-1/M821.054171
2-6/M821.008180.594
3-2/M820.925960.414
4-1-1/M821.328741
4-1/M821.033141
4-3-2/M821.31060.508
4-3/M821.227161
5-3/M821.083891
6-2/M821.200231
6-3/M821.090151
7-1/M821.041960.598
7-2/M821.154381
9-3-2/M821.1931

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.641680.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.84061
IL12-4/WTpooled0.943511
IL1-4/WTpooled1.15497
WT/WTpooled0.94681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.180141

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.963471
DC3000/delta hrp 6h1.057161
DC3000/delta hrp 12h1.160371
DC3000/delta hrp 24h1.082410.582

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.304050.045
DC3000 delta B/DC3000 delta AB1.338110.13

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.245491
Exp 36h1.125231
Exp 60h1.272570.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.011641
Var 0h1.005161
Var 12h I row2-row10.996721
Var 12h NI row2-row11.024081
Var 36h I row2-row11.114131
Var 36h NI row2-row10.832890.432
Var 60h I row2-row11.135161
Var 60h NI row2-row10.861610.408
Time course 0hI-0hNI1.128130.63
Time course 12hI-12hNI1.052290.647
Time course 36hI-36hNI1.314830.008
Time course 60hI-60hNI1.838440.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.057250.699
transgenic ySAMdc/azygous control (breaker)0.999851
transgenic ySAMdc/azygous control (red)1.225310.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.122350.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.923110.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.071160.307
Manapal/WT (break)1.064480.183
Manapal/WT (red)0.991580.863