Expression of 1-1-7.1.15.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.72431 | 0.221 |
27DAP/17DAP | 1.01966 | 1 |
39DAP/27DAP | 1.66699 | 0.215 |
41DAP/39DAP | 1.15669 | 0.642 |
42DAP/41DAP | 1.14897 | 0.802 |
43DAP/42DAP | 1.04943 | 0.934 |
47DAP/43DAP | 1.25421 | 0.527 |
52DAP/47DAP | 0.74049 | 0.43 |
57DAP/52DAP | 1.14306 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97864 | 0.578 |
17DAP/reference | 0.73526 | 0.013 |
27DAP/reference | 0.81104 | 0.064 |
39DAP/reference | 0.6852 | 0.016 |
41DAP/reference | 0.76537 | 0.012 |
42DAP/reference | 0.82042 | 0.001 |
43DAP/reference | 0.95197 | 0.538 |
47DAP/reference | 1.02478 | 0.752 |
52DAP/reference | 0.96736 | 0.438 |
57DAP/reference | 1.06279 | 0.463 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.37964 | 0.033 |
27DAP/17DAP | 1.17411 | 0.533 |
39DAP/27DAP | 1.97884 | 0.044 |
41DAP/39DAP | 1.31354 | 0.531 |
42DAP/41DAP | 0.97987 | 0.777 |
43DAP/42DAP | 1.13715 | 0.112 |
47DAP/43DAP | 1.19479 | 0.049 |
52DAP/47DAP | 0.62409 | 0.072 |
57DAP/52DAP | 0.63216 | 0.194 |
57DAP/7DAP | 0.54741 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11876 | 0.427 |
17DAP/reference | 0.81935 | 0.025 |
27DAP/reference | 0.89114 | 0.031 |
39DAP/reference | 0.71893 | 0.011 |
41DAP/reference | 0.78299 | 0.033 |
42DAP/reference | 0.9223 | 0.235 |
43DAP/reference | 0.69715 | 0.016 |
47DAP/reference | 0.85707 | 0.293 |
52DAP/reference | 0.73189 | 0.012 |
57DAP/reference | 0.6525 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10342 | 0.634 |
17DAP/reference | 0.64456 | 0.004 |
27DAP/reference | 0.80512 | 0.043 |
39DAP/reference | 0.66866 | 0.008 |
41DAP/reference | 0.72002 | 0.023 |
42DAP/reference | 0.71036 | 0.013 |
43DAP/reference | 0.87199 | 0.181 |
47DAP/reference | 0.86862 | 0.113 |
52DAP/reference | 0.62744 | 0.004 |
57DAP/reference | 0.78325 | 0.035 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06469 | 0.984 |
17DAP/reference | 0.68139 | 0.013 |
27DAP/reference | 0.72369 | 0.03 |
39DAP/reference | 0.85942 | 0.028 |
41DAP/reference | 0.83559 | 0.046 |
42DAP/reference | 0.85251 | 0.019 |
43DAP/reference | 0.81838 | 0.036 |
47DAP/reference | 0.77017 | 0.005 |
52DAP/reference | 0.76956 | 0.102 |
57DAP/reference | 0.73454 | 0.02 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12125 | 0.966 |
26DAP/20DAP | 0.54916 | 0.228 |
34DAP/26DAP | 1.14272 | 1 |
51DAP/34DAP | 1.61873 | 0.058 |
52DAP/51DAP | 0.82438 | 1 |
53DAP/52DAP | 1.37066 | 0.517 |
55DAP/53DAP | 0.5734 | 0.025 |
57DAP/55DAP | 0.92485 | 0.601 |
62DAP/57DAP | 0.83779 | 0.28 |
68DAP/62DAP | 1.03645 | 1 |
68DAP/14DAP | 1.71859 | 0.615 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.09309 | 0.015 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.04825 | 0.036 |
Mature Green Tomato/Ripe Tomato | 0.47932 | 0.031 |
Immature Eggplant/Mature Eggplant | 16.1569 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.87627 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.21439 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02842 | 1 |
1-1-2/M82 | 1.14476 | 1 |
12-2/M82 | 1.18641 | 1 |
12-4/M82 | 1.35794 | 1 |
1-3/M82 | 2.20966 | 0.255 |
2-1-1/M82 | 1.32793 | 0.439 |
2-1/M82 | 0.99861 | 1 |
2-6/M82 | 1.71633 | 0.405 |
3-2/M82 | 0.79805 | |
4-1-1/M82 | 1.68467 | 1 |
4-1/M82 | 1.68328 | 0.853 |
4-3-2/M82 | 1.26329 | 1 |
4-3/M82 | 1.23107 | 1 |
5-3/M82 | 0.99435 | 1 |
6-2/M82 | 1.84386 | 1 |
6-3/M82 | 1.1215 | 1 |
7-1/M82 | 0.94876 | 0.509 |
7-2/M82 | 1.5916 | 0.318 |
9-3-2/M82 | 2.50692 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.44013 | 0.365 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.4633 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.09565 | 1 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.41332 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92581 | |
DC3000/delta hrp 6h | 0.98832 | 0.95 |
DC3000/delta hrp 12h | 0.88641 | 1 |
DC3000/delta hrp 24h | 3.79249 | 0.03 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.44578 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.57449 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.33538 | 0.254 |
Exp 36h | 2.79912 | 0.409 |
Exp 60h | 1.83819 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94743 | 1 |
Var 0h | 0.9369 | 1 |
Var 12h I row2-row1 | 1.33874 | 0.235 |
Var 12h NI row2-row1 | 0.87909 | 0.82 |
Var 36h I row2-row1 | 1.32703 | 0.368 |
Var 36h NI row2-row1 | 1.40688 | 1 |
Var 60h I row2-row1 | 1.02409 | 1 |
Var 60h NI row2-row1 | 0.86848 | 0.516 |
Time course 0hI-0hNI | 1.11956 | 0.63 |
Time course 12hI-12hNI | 1.72734 | 0.021 |
Time course 36hI-36hNI | 2.51297 | 0.004 |
Time course 60hI-60hNI | 4.1429 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.79563 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.05978 | 1 |
transgenic ySAMdc/azygous control (red) | 0.86335 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05852 | 0.273 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.52067 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86055 | 1 |
Manapal/WT (break) | 0.68206 | 0.333 |
Manapal/WT (red) | 0.94496 | 0.728 |
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