Expression of 1-1-7.1.15.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.724310.221
27DAP/17DAP1.019661
39DAP/27DAP1.666990.215
41DAP/39DAP1.156690.642
42DAP/41DAP1.148970.802
43DAP/42DAP1.049430.934
47DAP/43DAP1.254210.527
52DAP/47DAP0.740490.43
57DAP/52DAP1.143060.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.978640.578
17DAP/reference0.735260.013
27DAP/reference0.811040.064
39DAP/reference0.68520.016
41DAP/reference0.765370.012
42DAP/reference0.820420.001
43DAP/reference0.951970.538
47DAP/reference1.024780.752
52DAP/reference0.967360.438
57DAP/reference1.062790.463

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.379640.033
27DAP/17DAP1.174110.533
39DAP/27DAP1.978840.044
41DAP/39DAP1.313540.531
42DAP/41DAP0.979870.777
43DAP/42DAP1.137150.112
47DAP/43DAP1.194790.049
52DAP/47DAP0.624090.072
57DAP/52DAP0.632160.194
57DAP/7DAP0.547411

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.118760.427
17DAP/reference0.819350.025
27DAP/reference0.891140.031
39DAP/reference0.718930.011
41DAP/reference0.782990.033
42DAP/reference0.92230.235
43DAP/reference0.697150.016
47DAP/reference0.857070.293
52DAP/reference0.731890.012
57DAP/reference0.65250.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.103420.634
17DAP/reference0.644560.004
27DAP/reference0.805120.043
39DAP/reference0.668660.008
41DAP/reference0.720020.023
42DAP/reference0.710360.013
43DAP/reference0.871990.181
47DAP/reference0.868620.113
52DAP/reference0.627440.004
57DAP/reference0.783250.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.064690.984
17DAP/reference0.681390.013
27DAP/reference0.723690.03
39DAP/reference0.859420.028
41DAP/reference0.835590.046
42DAP/reference0.852510.019
43DAP/reference0.818380.036
47DAP/reference0.770170.005
52DAP/reference0.769560.102
57DAP/reference0.734540.02

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.121250.966
26DAP/20DAP0.549160.228
34DAP/26DAP1.142721
51DAP/34DAP1.618730.058
52DAP/51DAP0.824381
53DAP/52DAP1.370660.517
55DAP/53DAP0.57340.025
57DAP/55DAP0.924850.601
62DAP/57DAP0.837790.28
68DAP/62DAP1.036451
68DAP/14DAP1.718590.615

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.093090.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.048250.036
Mature Green Tomato/Ripe Tomato0.479320.031
Immature Eggplant/Mature Eggplant16.15690.05
Ripe Pepper/Ripe Tomato1.876270.258
Mature Eggplant/Ripe Tomato0.214391

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.028421
1-1-2/M821.144761
12-2/M821.186411
12-4/M821.357941
1-3/M822.209660.255
2-1-1/M821.327930.439
2-1/M820.998611
2-6/M821.716330.405
3-2/M820.79805
4-1-1/M821.684671
4-1/M821.683280.853
4-3-2/M821.263291
4-3/M821.231071
5-3/M820.994351
6-2/M821.843861
6-3/M821.12151
7-1/M820.948760.509
7-2/M821.59160.318
9-3-2/M822.506921

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.440130.365
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.4633
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.095651
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.413320.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.92581
DC3000/delta hrp 6h0.988320.95
DC3000/delta hrp 12h0.886411
DC3000/delta hrp 24h3.792490.03

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.445780.025
DC3000 delta B/DC3000 delta AB0.574490.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.335380.254
Exp 36h2.799120.409
Exp 60h1.838190.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.947431
Var 0h0.93691
Var 12h I row2-row11.338740.235
Var 12h NI row2-row10.879090.82
Var 36h I row2-row11.327030.368
Var 36h NI row2-row11.406881
Var 60h I row2-row11.024091
Var 60h NI row2-row10.868480.516
Time course 0hI-0hNI1.119560.63
Time course 12hI-12hNI1.727340.021
Time course 36hI-36hNI2.512970.004
Time course 60hI-60hNI4.14290.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.795630.338
transgenic ySAMdc/azygous control (breaker)1.059781
transgenic ySAMdc/azygous control (red)0.863351

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.058520.273

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.520671

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.860551
Manapal/WT (break)0.682060.333
Manapal/WT (red)0.944960.728