Expression of 1-1-7.1.16.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.663840.602
27DAP/17DAP0.946220.913
39DAP/27DAP0.981750.733
41DAP/39DAP0.875860.646
42DAP/41DAP0.981431
43DAP/42DAP0.981910.925
47DAP/43DAP1.109760.52
52DAP/47DAP1.517240.374
57DAP/52DAP0.836930.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.00730.661
17DAP/reference1.091950.565
27DAP/reference1.016660.794
39DAP/reference1.131890.581
41DAP/reference1.064280.48
42DAP/reference0.996710.517
43DAP/reference0.971740.675
47DAP/reference0.90190.174
52DAP/reference0.921340.244
57DAP/reference0.830760.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.196020.5
27DAP/17DAP1.252320.905
39DAP/27DAP1.088290.751
41DAP/39DAP1.249160.773
42DAP/41DAP1.002030.732
43DAP/42DAP1.171291
47DAP/43DAP1.350460.227
52DAP/47DAP1.065890.945
57DAP/52DAP1.37090.346
57DAP/7DAP2.076840.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.042991
17DAP/reference0.770030.039
27DAP/reference0.857880.159
39DAP/reference0.933690.354
41DAP/reference0.922460.341
42DAP/reference0.945680.371
43DAP/reference1.076721
47DAP/reference0.918070.293
52DAP/reference0.937520.179
57DAP/reference1.01690.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.857770.268
17DAP/reference0.910890.326
27DAP/reference0.944630.407
39DAP/reference1.005560.642
41DAP/reference0.959810.34
42DAP/reference0.945650.237
43DAP/reference0.975650.581
47DAP/reference0.829940.168
52DAP/reference0.912550.203
57DAP/reference0.979190.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.782040.127
17DAP/reference1.033240.912
27DAP/reference0.791150.195
39DAP/reference0.852770.054
41DAP/reference0.941850.417
42DAP/reference0.948190.552
43DAP/reference0.776950.088
47DAP/reference0.983850.538
52DAP/reference1.050420.941
57DAP/reference1.469810.419

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.102961
26DAP/20DAP0.870121
34DAP/26DAP1.293431
51DAP/34DAP0.700990.125
52DAP/51DAP1.210630.776
53DAP/52DAP0.75140.242
55DAP/53DAP1.038210.852
57DAP/55DAP1.010660.938
62DAP/57DAP1.038541
68DAP/62DAP0.874020.641
68DAP/14DAP1.1930.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.017020.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.28952
Immature Eggplant/Mature Eggplant0.96784
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato2.0282

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.000391
12-2/M820.975330.955
12-4/M82N/AN/A
1-3/M820.754430.441
2-1-1/M821.04534
2-1/M82N/AN/A
2-6/M821.18381
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.11623
4-3-2/M82N/AN/A
4-3/M820.527540.578
5-3/M820.895871
6-2/M820.940611
6-3/M821.054761
7-1/M82N/AN/A
7-2/M820.84405
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.3423
IL2-6/WTpooled1.251920.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.130471
IL12-4/WTpooled1.080220.546
IL1-4/WTpooled1.07167
WT/WTpooled0.971781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.357881

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.040920.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.955091
DC3000/delta hrp 24h1.138680.322

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.717530.045
DC3000 delta B/DC3000 delta AB1.29126

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.956851
Exp 36h1.178451
Exp 60h1.150781

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.031521
Var 0h0.945061
Var 12h I row2-row11.343940.692
Var 12h NI row2-row11.334111
Var 36h I row2-row15.193141
Var 36h NI row2-row10.714950.645
Var 60h I row2-row11.060521
Var 60h NI row2-row10.821180.932
Time course 0hI-0hNI1.006520.958
Time course 12hI-12hNI1.027881
Time course 36hI-36hNI1.318060.28
Time course 60hI-60hNI1.386540.08

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.217341
transgenic ySAMdc/azygous control (breaker)1.33710.248
transgenic ySAMdc/azygous control (red)1.142780.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980560.371

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.901470.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.629940.172
Manapal/WT (break)1.062761
Manapal/WT (red)1.050611