Expression of 1-1-7.1.16.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95543 | 0.713 |
27DAP/17DAP | 1.0792 | 0.871 |
39DAP/27DAP | 0.83886 | 0.474 |
41DAP/39DAP | 1.60262 | 0.147 |
42DAP/41DAP | 1.05756 | 1 |
43DAP/42DAP | 0.86993 | 0.705 |
47DAP/43DAP | 1.09254 | 0.715 |
52DAP/47DAP | 1.22729 | 0.535 |
57DAP/52DAP | 0.92964 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98239 | 0.503 |
17DAP/reference | 1.00194 | 1 |
27DAP/reference | 1.03249 | 0.569 |
39DAP/reference | 0.93578 | 0.455 |
41DAP/reference | 0.97063 | 0.542 |
42DAP/reference | 0.93906 | 0.054 |
43DAP/reference | 0.95834 | 0.538 |
47DAP/reference | 0.91452 | 0.021 |
52DAP/reference | 0.87871 | 0.089 |
57DAP/reference | 0.80314 | 0.016 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98259 | 0.732 |
27DAP/17DAP | 1.0149 | 0.969 |
39DAP/27DAP | 1.03785 | 0.659 |
41DAP/39DAP | 1.08608 | 0.861 |
42DAP/41DAP | 0.95853 | 0.684 |
43DAP/42DAP | 1.00417 | 1 |
47DAP/43DAP | 1.01416 | 0.941 |
52DAP/47DAP | 0.97388 | 0.899 |
57DAP/52DAP | 1.01795 | 0.899 |
57DAP/7DAP | 1.13665 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87344 | 0.078 |
17DAP/reference | 0.89169 | 0.016 |
27DAP/reference | 0.85803 | 0.011 |
39DAP/reference | 0.94428 | 0.064 |
41DAP/reference | 0.95644 | 0.103 |
42DAP/reference | 0.75656 | 0.016 |
43DAP/reference | 0.86197 | 0.016 |
47DAP/reference | 0.78394 | 0.03 |
52DAP/reference | 0.91678 | 0.232 |
57DAP/reference | 0.86131 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97952 | 0.72 |
17DAP/reference | 0.90204 | 0.102 |
27DAP/reference | 0.84295 | 0.1 |
39DAP/reference | 0.87255 | 0.089 |
41DAP/reference | 0.78117 | 0.022 |
42DAP/reference | 0.83623 | 0.055 |
43DAP/reference | 0.90498 | 0.217 |
47DAP/reference | 0.91684 | 0.105 |
52DAP/reference | 0.95155 | 0.143 |
57DAP/reference | 1.05397 | 0.374 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90755 | 0.052 |
17DAP/reference | 0.93109 | 0.203 |
27DAP/reference | 0.93059 | 0.14 |
39DAP/reference | 0.91023 | 0.025 |
41DAP/reference | 0.92946 | 0.237 |
42DAP/reference | 0.79416 | 0.087 |
43DAP/reference | 0.83556 | 0.068 |
47DAP/reference | 0.9673 | 0.452 |
52DAP/reference | 0.88111 | 0.31 |
57DAP/reference | 0.58893 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94663 | 0.708 |
26DAP/20DAP | 0.97642 | 1 |
34DAP/26DAP | 1.02687 | 1 |
51DAP/34DAP | 0.9508 | 0.688 |
52DAP/51DAP | 1.02661 | 0.842 |
53DAP/52DAP | 1.03122 | 0.83 |
55DAP/53DAP | 0.9485 | 0.325 |
57DAP/55DAP | 1.06031 | 0.969 |
62DAP/57DAP | 1.01455 | 1 |
68DAP/62DAP | 1.04829 | 0.914 |
68DAP/14DAP | 0.94264 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9154 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.57771 | 0.17 |
Mature Green Tomato/Ripe Tomato | 0.60587 | 0.165 |
Immature Eggplant/Mature Eggplant | 1.51741 | 0.053 |
Ripe Pepper/Ripe Tomato | 0.99106 | 1 |
Mature Eggplant/Ripe Tomato | 0.87574 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01815 | 1 |
1-1-2/M82 | 0.92703 | 1 |
12-2/M82 | 1.18187 | |
12-4/M82 | 0.84621 | 1 |
1-3/M82 | 0.9634 | 1 |
2-1-1/M82 | 0.9965 | 1 |
2-1/M82 | 0.90341 | 1 |
2-6/M82 | 1.02217 | 0.329 |
3-2/M82 | 0.93795 | |
4-1-1/M82 | 0.95156 | |
4-1/M82 | 0.85838 | 1 |
4-3-2/M82 | 0.8421 | 1 |
4-3/M82 | 0.96557 | 1 |
5-3/M82 | 1.00944 | 1 |
6-2/M82 | 0.98416 | 1 |
6-3/M82 | 1.02218 | 1 |
7-1/M82 | 1.2199 | 1 |
7-2/M82 | 0.99392 | 1 |
9-3-2/M82 | 0.69714 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.63257 | 0.358 |
IL7-5/WTpooled | 0.58673 | |
IL7-3/WTpooled | 1.35913 | 0.362 |
IL12-4/WTpooled | 1.26276 | 0.595 |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.01435 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11549 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96758 | 1 |
DC3000/delta hrp 6h | 0.68984 | 0.942 |
DC3000/delta hrp 12h | 1.31307 | 1 |
DC3000/delta hrp 24h | 1.10462 | 0.37 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1054 | 0.441 |
DC3000 delta B/DC3000 delta AB | 1.04541 | 0.614 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90857 | 1 |
Exp 36h | 0.94966 | 0.943 |
Exp 60h | 1.23002 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92107 | 1 |
Var 0h | 1.00588 | 1 |
Var 12h I row2-row1 | 1.4821 | 0.473 |
Var 12h NI row2-row1 | 0.96083 | 0.82 |
Var 36h I row2-row1 | 0.9603 | 1 |
Var 36h NI row2-row1 | 0.92887 | 0.706 |
Var 60h I row2-row1 | 1.4864 | 0.562 |
Var 60h NI row2-row1 | 1.16652 | 0.904 |
Time course 0hI-0hNI | 1.18815 | 0.574 |
Time course 12hI-12hNI | 1.06927 | 0.684 |
Time course 36hI-36hNI | 1.0186 | 0.651 |
Time course 60hI-60hNI | 1.53563 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.07101 | 0.384 |
transgenic ySAMdc/azygous control (breaker) | 1.01203 | 1 |
transgenic ySAMdc/azygous control (red) | 0.9036 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9868 | 0.418 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06012 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10786 | 1 |
Manapal/WT (break) | 0.99793 | 1 |
Manapal/WT (red) | 1.02053 | 0.863 |
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