Expression of 1-1-7.1.17.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.046050.812
27DAP/17DAP0.83310.609
39DAP/27DAP1.106160.82
41DAP/39DAP1.198390.735
42DAP/41DAP1.128050.797
43DAP/42DAP0.995460.937
47DAP/43DAP1.03450.746
52DAP/47DAP0.996650.916
57DAP/52DAP1.008750.992

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.933370.326
17DAP/reference0.735140.007
27DAP/reference0.948730.444
39DAP/reference0.826080.062
41DAP/reference0.691780.008
42DAP/reference0.948880.176
43DAP/reference0.862140.034
47DAP/reference0.997110.602
52DAP/reference1.331570.176
57DAP/reference1.394120.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.896150.415
27DAP/17DAP0.936710.748
39DAP/27DAP1.067670.615
41DAP/39DAP1.009631
42DAP/41DAP0.960190.666
43DAP/42DAP1.093440.446
47DAP/43DAP0.965350.781
52DAP/47DAP0.974520.902
57DAP/52DAP0.888760.342
57DAP/7DAP0.981991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010321
17DAP/reference0.996110.693
27DAP/reference1.014580.664
39DAP/reference1.006730.74
41DAP/reference0.944250.116
42DAP/reference0.948380.029
43DAP/reference0.975320.48
47DAP/reference1.079660.604
52DAP/reference0.914360.09
57DAP/reference0.99430.648

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908670.329
17DAP/reference0.859050.099
27DAP/reference1.1280.396
39DAP/reference1.126450.514
41DAP/reference1.165530.215
42DAP/reference1.094230.519
43DAP/reference0.823150.125
47DAP/reference0.799740.012
52DAP/reference1.059930.417
57DAP/reference0.714350.004

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.941630.335
17DAP/reference1.000620.855
27DAP/reference1.031570.325
39DAP/reference1.031530.451
41DAP/reference1.056970.521
42DAP/reference1.358910.204
43DAP/reference1.146050.349
47DAP/reference1.089360.877
52DAP/reference0.923260.395
57DAP/reference1.846490.011

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.928651
26DAP/20DAP0.891030.512
34DAP/26DAP0.974760.945
51DAP/34DAP1.109690.429
52DAP/51DAP1.225670.358
53DAP/52DAP1.046550.738
55DAP/53DAP1.166210.097
57DAP/55DAP1.418830.61
62DAP/57DAP0.9720.994
68DAP/62DAP2.152270.054
68DAP/14DAP2.755920.018

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.810690.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.637640.148
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.777830.07
Ripe Pepper/Ripe Tomato2.251370.256
Mature Eggplant/Ripe Tomato1.298520.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.122380.877
1-1-2/M821.118391
12-2/M821.18191
12-4/M821.055541
1-3/M820.8770.441
2-1-1/M821.047820.689
2-1/M820.828910.74
2-6/M821.203210.594
3-2/M820.94155
4-1-1/M821.027081
4-1/M821.04941
4-3-2/M821.04602
4-3/M820.910491
5-3/M820.932011
6-2/M821.017711
6-3/M821.013761
7-1/M820.834590.803
7-2/M821.07361
9-3-2/M821.11735

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.79080.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.67191
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.865060.699
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.01231

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.967451
DC3000/delta hrp 6h1.08441
DC3000/delta hrp 12h1.104421
DC3000/delta hrp 24h1.106140.356

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.135611
DC3000 delta B/DC3000 delta AB0.791190.036

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.868811
Exp 36h0.669510.504
Exp 60h0.70370.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970631
Var 0h1.051111
Var 12h I row2-row10.96040.948
Var 12h NI row2-row10.870860.443
Var 36h I row2-row11.010881
Var 36h NI row2-row11.298741
Var 60h I row2-row11.015391
Var 60h NI row2-row11.16770.904
Time course 0hI-0hNI0.98320.97
Time course 12hI-12hNI0.959720.65
Time course 36hI-36hNI0.771090.023
Time course 60hI-60hNI0.460110.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.115370.339
transgenic ySAMdc/azygous control (breaker)0.988531
transgenic ySAMdc/azygous control (red)1.110540.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.045910.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.167690.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.548860.105
Manapal/WT (break)1.757680.126
Manapal/WT (red)1.244120.413