Expression of 1-1-7.1.17.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04605 | 0.812 |
27DAP/17DAP | 0.8331 | 0.609 |
39DAP/27DAP | 1.10616 | 0.82 |
41DAP/39DAP | 1.19839 | 0.735 |
42DAP/41DAP | 1.12805 | 0.797 |
43DAP/42DAP | 0.99546 | 0.937 |
47DAP/43DAP | 1.0345 | 0.746 |
52DAP/47DAP | 0.99665 | 0.916 |
57DAP/52DAP | 1.00875 | 0.992 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93337 | 0.326 |
17DAP/reference | 0.73514 | 0.007 |
27DAP/reference | 0.94873 | 0.444 |
39DAP/reference | 0.82608 | 0.062 |
41DAP/reference | 0.69178 | 0.008 |
42DAP/reference | 0.94888 | 0.176 |
43DAP/reference | 0.86214 | 0.034 |
47DAP/reference | 0.99711 | 0.602 |
52DAP/reference | 1.33157 | 0.176 |
57DAP/reference | 1.39412 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89615 | 0.415 |
27DAP/17DAP | 0.93671 | 0.748 |
39DAP/27DAP | 1.06767 | 0.615 |
41DAP/39DAP | 1.00963 | 1 |
42DAP/41DAP | 0.96019 | 0.666 |
43DAP/42DAP | 1.09344 | 0.446 |
47DAP/43DAP | 0.96535 | 0.781 |
52DAP/47DAP | 0.97452 | 0.902 |
57DAP/52DAP | 0.88876 | 0.342 |
57DAP/7DAP | 0.98199 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01032 | 1 |
17DAP/reference | 0.99611 | 0.693 |
27DAP/reference | 1.01458 | 0.664 |
39DAP/reference | 1.00673 | 0.74 |
41DAP/reference | 0.94425 | 0.116 |
42DAP/reference | 0.94838 | 0.029 |
43DAP/reference | 0.97532 | 0.48 |
47DAP/reference | 1.07966 | 0.604 |
52DAP/reference | 0.91436 | 0.09 |
57DAP/reference | 0.9943 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90867 | 0.329 |
17DAP/reference | 0.85905 | 0.099 |
27DAP/reference | 1.128 | 0.396 |
39DAP/reference | 1.12645 | 0.514 |
41DAP/reference | 1.16553 | 0.215 |
42DAP/reference | 1.09423 | 0.519 |
43DAP/reference | 0.82315 | 0.125 |
47DAP/reference | 0.79974 | 0.012 |
52DAP/reference | 1.05993 | 0.417 |
57DAP/reference | 0.71435 | 0.004 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94163 | 0.335 |
17DAP/reference | 1.00062 | 0.855 |
27DAP/reference | 1.03157 | 0.325 |
39DAP/reference | 1.03153 | 0.451 |
41DAP/reference | 1.05697 | 0.521 |
42DAP/reference | 1.35891 | 0.204 |
43DAP/reference | 1.14605 | 0.349 |
47DAP/reference | 1.08936 | 0.877 |
52DAP/reference | 0.92326 | 0.395 |
57DAP/reference | 1.84649 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92865 | 1 |
26DAP/20DAP | 0.89103 | 0.512 |
34DAP/26DAP | 0.97476 | 0.945 |
51DAP/34DAP | 1.10969 | 0.429 |
52DAP/51DAP | 1.22567 | 0.358 |
53DAP/52DAP | 1.04655 | 0.738 |
55DAP/53DAP | 1.16621 | 0.097 |
57DAP/55DAP | 1.41883 | 0.61 |
62DAP/57DAP | 0.972 | 0.994 |
68DAP/62DAP | 2.15227 | 0.054 |
68DAP/14DAP | 2.75592 | 0.018 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.81069 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.63764 | 0.148 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.77783 | 0.07 |
Ripe Pepper/Ripe Tomato | 2.25137 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.29852 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.12238 | 0.877 |
1-1-2/M82 | 1.11839 | 1 |
12-2/M82 | 1.1819 | 1 |
12-4/M82 | 1.05554 | 1 |
1-3/M82 | 0.877 | 0.441 |
2-1-1/M82 | 1.04782 | 0.689 |
2-1/M82 | 0.82891 | 0.74 |
2-6/M82 | 1.20321 | 0.594 |
3-2/M82 | 0.94155 | |
4-1-1/M82 | 1.02708 | 1 |
4-1/M82 | 1.04941 | |
4-3-2/M82 | 1.04602 | |
4-3/M82 | 0.91049 | 1 |
5-3/M82 | 0.93201 | 1 |
6-2/M82 | 1.01771 | 1 |
6-3/M82 | 1.01376 | 1 |
7-1/M82 | 0.83459 | 0.803 |
7-2/M82 | 1.0736 | 1 |
9-3-2/M82 | 1.11735 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7908 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.6719 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.86506 | 0.699 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0123 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96745 | 1 |
DC3000/delta hrp 6h | 1.0844 | 1 |
DC3000/delta hrp 12h | 1.10442 | 1 |
DC3000/delta hrp 24h | 1.10614 | 0.356 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13561 | 1 |
DC3000 delta B/DC3000 delta AB | 0.79119 | 0.036 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86881 | 1 |
Exp 36h | 0.66951 | 0.504 |
Exp 60h | 0.7037 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97063 | 1 |
Var 0h | 1.05111 | 1 |
Var 12h I row2-row1 | 0.9604 | 0.948 |
Var 12h NI row2-row1 | 0.87086 | 0.443 |
Var 36h I row2-row1 | 1.01088 | 1 |
Var 36h NI row2-row1 | 1.29874 | 1 |
Var 60h I row2-row1 | 1.01539 | 1 |
Var 60h NI row2-row1 | 1.1677 | 0.904 |
Time course 0hI-0hNI | 0.9832 | 0.97 |
Time course 12hI-12hNI | 0.95972 | 0.65 |
Time course 36hI-36hNI | 0.77109 | 0.023 |
Time course 60hI-60hNI | 0.46011 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11537 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 0.98853 | 1 |
transgenic ySAMdc/azygous control (red) | 1.11054 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04591 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16769 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.54886 | 0.105 |
Manapal/WT (break) | 1.75768 | 0.126 |
Manapal/WT (red) | 1.24412 | 0.413 |
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