Expression of 1-1-7.1.17.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23104 | 0.403 |
27DAP/17DAP | 0.92813 | 0.817 |
39DAP/27DAP | 1.33469 | 0.347 |
41DAP/39DAP | 1.17769 | 0.54 |
42DAP/41DAP | 0.91585 | 1 |
43DAP/42DAP | 0.91673 | 0.801 |
47DAP/43DAP | 1.32217 | 0.668 |
52DAP/47DAP | 1.31031 | 0.538 |
57DAP/52DAP | 0.98702 | 0.976 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96671 | 0.476 |
17DAP/reference | 1.04982 | 0.318 |
27DAP/reference | 0.97967 | 0.654 |
39DAP/reference | 1.04632 | 0.514 |
41DAP/reference | 1.01471 | 0.759 |
42DAP/reference | 0.90536 | 0.027 |
43DAP/reference | 1.09803 | 0.163 |
47DAP/reference | 1.00234 | 0.764 |
52DAP/reference | 0.91441 | 0.167 |
57DAP/reference | 0.83721 | 0.033 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92982 | 0.509 |
27DAP/17DAP | 0.97858 | 0.887 |
39DAP/27DAP | 1.09672 | 0.548 |
41DAP/39DAP | 0.99577 | 0.986 |
42DAP/41DAP | 0.90144 | 0.174 |
43DAP/42DAP | 1.00028 | 1 |
47DAP/43DAP | 1.12225 | 0.325 |
52DAP/47DAP | 0.84718 | 0.378 |
57DAP/52DAP | 0.88126 | 0.356 |
57DAP/7DAP | 0.92709 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84745 | 0.091 |
17DAP/reference | 0.97395 | 0.447 |
27DAP/reference | 0.85401 | 0.215 |
39DAP/reference | 1.03607 | 1 |
41DAP/reference | 0.7803 | 0.06 |
42DAP/reference | 0.86575 | 0.082 |
43DAP/reference | 0.89821 | 0.159 |
47DAP/reference | 1.07171 | 0.7 |
52DAP/reference | 1.17801 | 0.183 |
57DAP/reference | 0.94241 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92097 | 0.362 |
17DAP/reference | 0.84147 | 0.102 |
27DAP/reference | 0.86025 | 0.1 |
39DAP/reference | 0.82208 | 0.055 |
41DAP/reference | 0.97017 | 0.441 |
42DAP/reference | 0.99013 | 0.482 |
43DAP/reference | 0.91622 | 0.292 |
47DAP/reference | 0.84583 | 0.014 |
52DAP/reference | 0.92308 | 0.171 |
57DAP/reference | 0.84154 | 0.026 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89584 | 0.362 |
17DAP/reference | 0.96813 | 0.681 |
27DAP/reference | 1.09552 | 0.531 |
39DAP/reference | 0.88597 | 0.222 |
41DAP/reference | 0.94283 | 0.459 |
42DAP/reference | 0.72522 | 0.087 |
43DAP/reference | 1.14219 | 0.855 |
47DAP/reference | 0.92541 | 0.24 |
52DAP/reference | 1.04137 | 0.952 |
57DAP/reference | 0.97599 | 0.444 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18207 | 0.878 |
26DAP/20DAP | 0.85517 | 0.317 |
34DAP/26DAP | 1.10855 | 1 |
51DAP/34DAP | 1.15185 | 0.55 |
52DAP/51DAP | 1.04928 | 0.86 |
53DAP/52DAP | 1.07084 | 0.643 |
55DAP/53DAP | 1.05105 | 0.798 |
57DAP/55DAP | 1.01909 | 0.875 |
62DAP/57DAP | 0.98313 | 0.994 |
68DAP/62DAP | 1.13686 | 0.936 |
68DAP/14DAP | 0.99502 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.25295 | 0.018 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.68571 | 0.215 |
Mature Green Tomato/Ripe Tomato | 0.46487 | 0.119 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.40762 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.70251 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.83493 | 0.736 |
1-1-2/M82 | 0.93204 | 0.958 |
12-2/M82 | 1.18115 | 0.61 |
12-4/M82 | 0.94022 | 1 |
1-3/M82 | 0.96474 | 1 |
2-1-1/M82 | 0.8189 | 0.92 |
2-1/M82 | 0.78066 | 0.74 |
2-6/M82 | 1.13287 | 0.695 |
3-2/M82 | 0.90333 | |
4-1-1/M82 | 0.91084 | 1 |
4-1/M82 | 1.15196 | |
4-3-2/M82 | 1.05393 | |
4-3/M82 | 0.97298 | 1 |
5-3/M82 | 0.96537 | 0.642 |
6-2/M82 | 0.79072 | 0.497 |
6-3/M82 | 1.03978 | 1 |
7-1/M82 | 1.1129 | 1 |
7-2/M82 | 0.95004 | 1 |
9-3-2/M82 | 1.15249 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.71536 | 0.277 |
IL2-6/WTpooled | 0.50947 | 0.473 |
IL7-5/WTpooled | 0.82871 | 1 |
IL7-3/WTpooled | 1.96437 | 0.362 |
IL12-4/WTpooled | 1.28466 | 0.737 |
IL1-4/WTpooled | 1.46139 | 0.426 |
WT/WTpooled | 1.0803 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.24929 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03648 | 0.921 |
DC3000/delta hrp 6h | 0.98693 | 0.95 |
DC3000/delta hrp 12h | 1.23576 | 1 |
DC3000/delta hrp 24h | 1.22873 | 0.232 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08033 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.02837 | 0.687 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01613 | 1 |
Var 0h | 0.97346 | 1 |
Var 12h I row2-row1 | 1.04556 | 0.58 |
Var 12h NI row2-row1 | 0.90739 | 0.713 |
Var 36h I row2-row1 | 0.96061 | 1 |
Var 36h NI row2-row1 | 0.98861 | 0.852 |
Var 60h I row2-row1 | 1.0226 | 1 |
Var 60h NI row2-row1 | 1.12831 | 0.904 |
Time course 0hI-0hNI | 0.95229 | 0.478 |
Time course 12hI-12hNI | 1.04927 | 0.572 |
Time course 36hI-36hNI | 0.8799 | 0.048 |
Time course 60hI-60hNI | 0.9756 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98547 | 0.309 |
transgenic ySAMdc/azygous control (breaker) | 0.80117 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.84574 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01865 | 0.287 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08837 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73295 | 1 |
Manapal/WT (break) | 0.72368 | 0.299 |
Manapal/WT (red) | 0.57971 | 0.181 |
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