Expression of 1-1-7.1.17.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.231040.403
27DAP/17DAP0.928130.817
39DAP/27DAP1.334690.347
41DAP/39DAP1.177690.54
42DAP/41DAP0.915851
43DAP/42DAP0.916730.801
47DAP/43DAP1.322170.668
52DAP/47DAP1.310310.538
57DAP/52DAP0.987020.976

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.966710.476
17DAP/reference1.049820.318
27DAP/reference0.979670.654
39DAP/reference1.046320.514
41DAP/reference1.014710.759
42DAP/reference0.905360.027
43DAP/reference1.098030.163
47DAP/reference1.002340.764
52DAP/reference0.914410.167
57DAP/reference0.837210.033

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.929820.509
27DAP/17DAP0.978580.887
39DAP/27DAP1.096720.548
41DAP/39DAP0.995770.986
42DAP/41DAP0.901440.174
43DAP/42DAP1.000281
47DAP/43DAP1.122250.325
52DAP/47DAP0.847180.378
57DAP/52DAP0.881260.356
57DAP/7DAP0.927091

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.847450.091
17DAP/reference0.973950.447
27DAP/reference0.854010.215
39DAP/reference1.036071
41DAP/reference0.78030.06
42DAP/reference0.865750.082
43DAP/reference0.898210.159
47DAP/reference1.071710.7
52DAP/reference1.178010.183
57DAP/reference0.942410.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.920970.362
17DAP/reference0.841470.102
27DAP/reference0.860250.1
39DAP/reference0.822080.055
41DAP/reference0.970170.441
42DAP/reference0.990130.482
43DAP/reference0.916220.292
47DAP/reference0.845830.014
52DAP/reference0.923080.171
57DAP/reference0.841540.026

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.895840.362
17DAP/reference0.968130.681
27DAP/reference1.095520.531
39DAP/reference0.885970.222
41DAP/reference0.942830.459
42DAP/reference0.725220.087
43DAP/reference1.142190.855
47DAP/reference0.925410.24
52DAP/reference1.041370.952
57DAP/reference0.975990.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.182070.878
26DAP/20DAP0.855170.317
34DAP/26DAP1.108551
51DAP/34DAP1.151850.55
52DAP/51DAP1.049280.86
53DAP/52DAP1.070840.643
55DAP/53DAP1.051050.798
57DAP/55DAP1.019090.875
62DAP/57DAP0.983130.994
68DAP/62DAP1.136860.936
68DAP/14DAP0.995021

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.252950.018

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.685710.215
Mature Green Tomato/Ripe Tomato0.464870.119
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.407620.224
Mature Eggplant/Ripe Tomato0.702511

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.834930.736
1-1-2/M820.932040.958
12-2/M821.181150.61
12-4/M820.940221
1-3/M820.964741
2-1-1/M820.81890.92
2-1/M820.780660.74
2-6/M821.132870.695
3-2/M820.90333
4-1-1/M820.910841
4-1/M821.15196
4-3-2/M821.05393
4-3/M820.972981
5-3/M820.965370.642
6-2/M820.790720.497
6-3/M821.039781
7-1/M821.11291
7-2/M820.950041
9-3-2/M821.15249

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.715360.277
IL2-6/WTpooled0.509470.473
IL7-5/WTpooled0.828711
IL7-3/WTpooled1.964370.362
IL12-4/WTpooled1.284660.737
IL1-4/WTpooled1.461390.426
WT/WTpooled1.08031

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.249290.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036480.921
DC3000/delta hrp 6h0.986930.95
DC3000/delta hrp 12h1.235761
DC3000/delta hrp 24h1.228730.232

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.080330.556
DC3000 delta B/DC3000 delta AB1.028370.687

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016131
Var 0h0.973461
Var 12h I row2-row11.045560.58
Var 12h NI row2-row10.907390.713
Var 36h I row2-row10.960611
Var 36h NI row2-row10.988610.852
Var 60h I row2-row11.02261
Var 60h NI row2-row11.128310.904
Time course 0hI-0hNI0.952290.478
Time course 12hI-12hNI1.049270.572
Time course 36hI-36hNI0.87990.048
Time course 60hI-60hNI0.97560.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.985470.309
transgenic ySAMdc/azygous control (breaker)0.801170.15
transgenic ySAMdc/azygous control (red)0.845741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018650.287

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.088371

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.732951
Manapal/WT (break)0.723680.299
Manapal/WT (red)0.579710.181