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Expression of 1-1-7.1.18.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.198410.863
27DAP/17DAP1.067970.874
39DAP/27DAP1.019361
41DAP/39DAP1.191510.735
42DAP/41DAP1.359560.441
43DAP/42DAP0.826620.454
47DAP/43DAP0.756190.298
52DAP/47DAP1.469340.922
57DAP/52DAP1.275420.853

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.038550.872
17DAP/reference1.046450.675
27DAP/reference1.048060.446
39DAP/reference1.069820.413
41DAP/reference1.104570.365
42DAP/reference1.170530.027
43DAP/reference0.993270.84
47DAP/reference0.992490.568
52DAP/reference1.203530.524
57DAP/reference1.153220.31

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.04640.871
27DAP/17DAP1.180470.598
39DAP/27DAP1.098991
41DAP/39DAP1.339370.046
42DAP/41DAP0.872720.206
43DAP/42DAP1.211530.351
47DAP/43DAP1.214790.572
52DAP/47DAP0.934480.824
57DAP/52DAP1.270670.355
57DAP/7DAP1.350870.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.988080.613
17DAP/reference0.935610.144
27DAP/reference1.067260.371
39DAP/reference0.804380.056
41DAP/reference0.917710.213
42DAP/reference0.67770.01
43DAP/reference1.027510.694
47DAP/reference1.067520.537
52DAP/reference1.001760.74
57DAP/reference0.95930.396

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.084680.491
17DAP/reference1.125580.216
27DAP/reference1.087030.552
39DAP/reference1.071720.463
41DAP/reference0.901890.164
42DAP/reference0.944320.189
43DAP/reference1.208630.034
47DAP/reference1.033730.388
52DAP/reference1.130220.322
57DAP/reference1.173290.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.126350.347
17DAP/reference0.923160.374
27DAP/reference0.782790.031
39DAP/reference0.864420.035
41DAP/reference0.929790.417
42DAP/reference0.925440.361
43DAP/reference0.858980.171
47DAP/reference0.969670.494
52DAP/reference1.357290.228
57DAP/reference1.957730.2

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.279170.85
26DAP/20DAP0.850151
34DAP/26DAP1.431751
51DAP/34DAP1.04320.927
52DAP/51DAP1.250490.758
53DAP/52DAP0.847030.365
55DAP/53DAP0.94060.698
57DAP/55DAP0.968610.854
62DAP/57DAP1.310710.029
68DAP/62DAP1.070670.971
68DAP/14DAP1.00761

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.053560.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.788030.261
Mature Green Tomato/Ripe Tomato1.366410.015
Immature Eggplant/Mature Eggplant1.53550.055
Ripe Pepper/Ripe Tomato0.833220.224
Mature Eggplant/Ripe Tomato0.382580.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.75264N/A
1-1-2/M820.91842N/A
12-2/M82N/AN/A
12-4/M821.000411
1-3/M820.88094N/A
2-1-1/M820.9709N/A
2-1/M820.78903N/A
2-6/M820.79092N/A
3-2/M821.30584N/A
4-1-1/M820.90879N/A
4-1/M821.13547N/A
4-3-2/M820.84835N/A
4-3/M820.87780.611
5-3/M821.148660.572
6-2/M820.885941
6-3/M821.162511
7-1/M820.98351
7-2/M820.875220.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.999971
IL2-6/WTpooled1.088610.531
IL7-5/WTpooled0.855421
IL7-3/WTpooled0.89973N/A
IL12-4/WTpooled1.543180.516
IL1-4/WTpooled0.97890.476
WT/WTpooled1.020751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.338490.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99141
DC3000/delta hrp 6h0.959650.95
DC3000/delta hrp 12h1.053451
DC3000/delta hrp 24h1.015590.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.156391
Exp 36h1.222070.693
Exp 60h1.326270.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.375651
Var 0h0.991070.594
Var 12h I row2-row11.157810.736
Var 12h NI row2-row12.343741
Var 36h I row2-row11.412780.908
Var 36h NI row2-row10.792830.743
Var 60h I row2-row11.004130.952
Var 60h NI row2-row10.868510.977
Time course 0hI-0hNI1.698520.719
Time course 12hI-12hNI0.932980.719
Time course 36hI-36hNI1.956750.128
Time course 60hI-60hNI2.19160.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.202370.384
transgenic ySAMdc/azygous control (breaker)0.71380.134
transgenic ySAMdc/azygous control (red)1.194320.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.957350.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.791880.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.959671
Manapal/WT (break)1.20891
Manapal/WT (red)0.768030.184