Expression of 1-1-7.1.19.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.033890.904
27DAP/17DAP1.146040.833
39DAP/27DAP0.957440.682
41DAP/39DAP1.236270.447
42DAP/41DAP1.184820.777
43DAP/42DAP0.965060.877
47DAP/43DAP1.129060.659
52DAP/47DAP1.163090.806
57DAP/52DAP1.017710.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.348230.147
17DAP/reference1.513030.013
27DAP/reference1.577010.139
39DAP/reference1.686790.01
41DAP/reference1.93860.016
42DAP/reference1.426630.003
43DAP/reference1.677740.73
47DAP/reference1.47740.002
52DAP/reference1.305640.84
57DAP/reference2.17455

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977560.663
27DAP/17DAP0.975520.614
39DAP/27DAP1.071670.436
41DAP/39DAP1.151370.232
42DAP/41DAP0.99660.899
43DAP/42DAP0.995771
47DAP/43DAP0.986120.911
52DAP/47DAP0.991240.941
57DAP/52DAP1.028630.818
57DAP/7DAP1.079571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.929010.168
17DAP/reference0.921860.013
27DAP/reference0.954290.135
39DAP/reference0.956270.095
41DAP/reference0.904780.146
42DAP/reference0.873110.136
43DAP/reference0.876540.035
47DAP/reference0.981220.671
52DAP/reference0.897130.077
57DAP/reference0.858620.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.326670.07
17DAP/reference1.653810.007
27DAP/reference1.414890.017
39DAP/reference1.426480.011
41DAP/reference1.451210.006
42DAP/reference1.33040.05
43DAP/reference1.590460.027
47DAP/reference1.244020.037
52DAP/reference1.606930.006
57DAP/reference2.013240.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.064250.775
17DAP/reference1.109310.326
27DAP/reference1.024260.805
39DAP/reference1.033250.935
41DAP/reference0.994210.754
42DAP/reference1.000871
43DAP/reference1.235120.355
47DAP/reference1.341670.089
52DAP/reference0.950860.505
57DAP/reference0.695020.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.886210.01
26DAP/20DAP0.945140.512
34DAP/26DAP1.030570.819
51DAP/34DAP0.93820.618
52DAP/51DAP1.011330.915
53DAP/52DAP1.07820.502
55DAP/53DAP0.940330.195
57DAP/55DAP1.083670.745
62DAP/57DAP1.129571
68DAP/62DAP0.792690.429
68DAP/14DAP0.674430.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.005051

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.840.317
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.155
Mature Eggplant/Ripe Tomato0.28810.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.106060.551
1-1-2/M820.990811
12-2/M821.21451
12-4/M820.95871
1-3/M820.82820.501
2-1-1/M820.919480.465
2-1/M820.922771
2-6/M821.012391
3-2/M820.79699
4-1-1/M821.003151
4-1/M820.95481
4-3-2/M820.859171
4-3/M821.024451
5-3/M821.016111
6-2/M821.003551
6-3/M820.994441
7-1/M820.96791
7-2/M820.962111
9-3-2/M820.844421

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.156460.531
IL7-5/WTpooled1.30679
IL7-3/WTpooled0.914421
IL12-4/WTpooled1.246330.624
IL1-4/WTpooled0.884130.699
WT/WTpooled0.876941

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.014391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.03360.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.070721
DC3000/delta hrp 24h1.001151

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.071060.183
DC3000 delta B/DC3000 delta AB1.03290.579

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.961551
Var 0h1.040361
Var 12h I row2-row10.996771
Var 12h NI row2-row11.069021
Var 36h I row2-row11.100780.309
Var 36h NI row2-row10.737670.522
Var 60h I row2-row10.988851
Var 60h NI row2-row10.930070.516
Time course 0hI-0hNI1.136940.262
Time course 12hI-12hNI1.013520.833
Time course 36hI-36hNI1.320110.006
Time course 60hI-60hNI2.779660.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.321941
transgenic ySAMdc/azygous control (red)0.631771

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.865220.075

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.37860.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.965790.728