Expression of 1-1-7.1.19.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2739 | 0.443 |
27DAP/17DAP | 0.86396 | 0.649 |
39DAP/27DAP | 1.54643 | 0.21 |
41DAP/39DAP | 0.64667 | 0.068 |
42DAP/41DAP | 1.19549 | 0.894 |
43DAP/42DAP | 1.22189 | 0.962 |
47DAP/43DAP | 0.6659 | 0.106 |
52DAP/47DAP | 0.90453 | 0.705 |
57DAP/52DAP | 1.30458 | 0.941 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98701 | 0.589 |
17DAP/reference | 1.3465 | 0.104 |
27DAP/reference | 1.14179 | 0.179 |
39DAP/reference | 1.08869 | 0.871 |
41DAP/reference | 1.35409 | 0.012 |
42DAP/reference | 1.07754 | 0.782 |
43DAP/reference | 1.14457 | 0.306 |
47DAP/reference | 1.16029 | 0.114 |
52DAP/reference | 1.41983 | 0.022 |
57DAP/reference | 1.14388 | 0.392 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98483 | 0.763 |
27DAP/17DAP | 0.98682 | 0.854 |
39DAP/27DAP | 0.9552 | 0.488 |
41DAP/39DAP | 1.22794 | 0.799 |
42DAP/41DAP | 1.00398 | 0.913 |
43DAP/42DAP | 1.02688 | 0.664 |
47DAP/43DAP | 0.95644 | 0.63 |
52DAP/47DAP | 1.00952 | 0.973 |
57DAP/52DAP | 0.95454 | 0.678 |
57DAP/7DAP | 0.86247 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97901 | 0.445 |
17DAP/reference | 0.92068 | 0.025 |
27DAP/reference | 1.07368 | 0.041 |
39DAP/reference | 1.12065 | 0.081 |
41DAP/reference | 1.21815 | 0.045 |
42DAP/reference | 1.06388 | 0.233 |
43DAP/reference | 1.20503 | 0.273 |
47DAP/reference | 1.22326 | 0.732 |
52DAP/reference | 1.28414 | 0.008 |
57DAP/reference | 1.60349 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87748 | 0.457 |
17DAP/reference | 0.72641 | 0.022 |
27DAP/reference | 1.09418 | 0.639 |
39DAP/reference | 0.898 | 0.159 |
41DAP/reference | 1.11642 | 0.72 |
42DAP/reference | 0.99495 | 0.594 |
43DAP/reference | 1.07055 | 0.793 |
47DAP/reference | 1.0169 | 0.916 |
52DAP/reference | 0.98434 | 0.537 |
57DAP/reference | 1.04608 | 0.688 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80737 | 0.063 |
17DAP/reference | 0.86737 | 0.141 |
27DAP/reference | 1.00732 | 0.903 |
39DAP/reference | 1.01076 | 0.889 |
41DAP/reference | 1.00167 | 1 |
42DAP/reference | 1.18222 | 0.5 |
43DAP/reference | 1.14051 | 0.109 |
47DAP/reference | 1.0042 | 1 |
52DAP/reference | 0.85399 | 0.289 |
57DAP/reference | 1.12057 | 0.539 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12004 | 0.966 |
26DAP/20DAP | 1.24911 | 0.315 |
34DAP/26DAP | 1.07739 | 0.819 |
51DAP/34DAP | 1.04937 | 0.883 |
52DAP/51DAP | 0.86142 | 0.151 |
53DAP/52DAP | 0.9772 | 0.897 |
55DAP/53DAP | 1.03199 | 0.948 |
57DAP/55DAP | 0.95049 | 0.795 |
62DAP/57DAP | 0.86067 | 0.466 |
68DAP/62DAP | 1.07918 | 0.984 |
68DAP/14DAP | 1.1745 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.93709 | 0.025 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.72107 | 0.032 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.45604 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.01635 | 1 |
1-3/M82 | 0.80245 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.36514 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 2.18441 | |
4-3-2/M82 | 1.40112 | 1 |
4-3/M82 | 1.46482 | |
5-3/M82 | 0.81547 | 0.419 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.85902 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.19855 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05277 | 1 |
IL2-6/WTpooled | 1.1231 | 0.395 |
IL7-5/WTpooled | 1.01999 | 1 |
IL7-3/WTpooled | 1.1707 | 1 |
IL12-4/WTpooled | 1.01415 | 0.891 |
IL1-4/WTpooled | 0.98775 | 1 |
WT/WTpooled | 1.03958 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03394 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09216 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.74786 | 1 |
DC3000/delta hrp 24h | 0.79758 | 0.051 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.89112 | 0.318 |
DC3000 delta B/DC3000 delta AB | 0.94773 | 0.445 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00464 | 1 |
Var 0h | 0.92662 | 1 |
Var 12h I row2-row1 | 0.85426 | 0.31 |
Var 12h NI row2-row1 | 1.098 | 0.281 |
Var 36h I row2-row1 | 1.17835 | 0.283 |
Var 36h NI row2-row1 | 0.92664 | 0.61 |
Var 60h I row2-row1 | 0.96625 | 0.582 |
Var 60h NI row2-row1 | 0.915 | |
Time course 0hI-0hNI | 1.04975 | 0.603 |
Time course 12hI-12hNI | 0.95417 | 0.624 |
Time course 36hI-36hNI | 1.11022 | 0.056 |
Time course 60hI-60hNI | 1.58023 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.72695 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.869 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94925 | 0.459 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93987 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.43851 | 1 |
Manapal/WT (break) | 0.64641 | 1 |
Manapal/WT (red) | 0.51933 | 0.181 |
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