Expression of 1-1-7.1.19.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94802 | 0.683 |
27DAP/17DAP | 1.12524 | 0.895 |
39DAP/27DAP | 0.78511 | 0.449 |
41DAP/39DAP | 0.82809 | 0.358 |
42DAP/41DAP | 0.90273 | 1 |
43DAP/42DAP | 1.19588 | 0.867 |
47DAP/43DAP | 0.95986 | 0.825 |
52DAP/47DAP | 0.963 | 0.837 |
57DAP/52DAP | 1.09569 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80545 | 0.073 |
17DAP/reference | 1.03892 | 0.631 |
27DAP/reference | 1.35253 | 0.009 |
39DAP/reference | 1.4781 | 0.209 |
41DAP/reference | 1.52229 | 0.012 |
42DAP/reference | 1.38972 | 0.007 |
43DAP/reference | 1.16276 | 0.152 |
47DAP/reference | 1.21799 | 0.666 |
52DAP/reference | 0.83986 | 0.029 |
57DAP/reference | 0.8382 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89826 | 0.153 |
27DAP/17DAP | 0.97596 | 0.821 |
39DAP/27DAP | 1.01533 | 0.824 |
41DAP/39DAP | 1.01544 | 0.914 |
42DAP/41DAP | 0.96303 | 0.649 |
43DAP/42DAP | 1.02588 | 0.324 |
47DAP/43DAP | 0.99887 | 0.998 |
52DAP/47DAP | 0.90796 | 0.389 |
57DAP/52DAP | 0.97576 | 0.705 |
57DAP/7DAP | 1.0215 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16231 | 0.246 |
17DAP/reference | 0.87947 | 0.108 |
27DAP/reference | 1.06966 | 0.453 |
39DAP/reference | 1.09111 | 0.351 |
41DAP/reference | 1.29677 | 0.06 |
42DAP/reference | 1.20122 | 0.233 |
43DAP/reference | 1.01842 | 1 |
47DAP/reference | 1.29401 | 0.124 |
52DAP/reference | 1.34154 | 0.375 |
57DAP/reference | 1.04136 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93272 | 0.386 |
17DAP/reference | 1.7401 | 0.007 |
27DAP/reference | 1.90028 | 0.013 |
39DAP/reference | 2.26529 | 0.011 |
41DAP/reference | 1.61399 | 0.008 |
42DAP/reference | 2.14492 | 0.007 |
43DAP/reference | 1.87444 | 0.02 |
47DAP/reference | 1.62652 | 0.011 |
52DAP/reference | 2.35893 | 0.007 |
57DAP/reference | 1.23891 | 0.072 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89988 | 0.147 |
17DAP/reference | 0.91625 | 0.305 |
27DAP/reference | 0.95019 | 0.376 |
39DAP/reference | 1.03163 | 0.889 |
41DAP/reference | 1.2316 | 0.257 |
42DAP/reference | 1.25182 | 0.062 |
43DAP/reference | 1.12658 | 0.608 |
47DAP/reference | 1.22697 | 0.025 |
52DAP/reference | 0.95487 | 0.551 |
57DAP/reference | 1.07051 | 0.604 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03144 | 1 |
26DAP/20DAP | 1.04395 | 0.826 |
34DAP/26DAP | 1.00272 | 1 |
51DAP/34DAP | 0.96909 | 0.758 |
52DAP/51DAP | 0.98386 | 1 |
53DAP/52DAP | 1.05936 | 0.662 |
55DAP/53DAP | 0.87302 | 0.031 |
57DAP/55DAP | 0.86859 | 0.366 |
62DAP/57DAP | 1.02279 | 1 |
68DAP/62DAP | 0.92387 | 0.747 |
68DAP/14DAP | 0.79566 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14085 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.06997 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.80008 | 0.106 |
Immature Eggplant/Mature Eggplant | 0.65065 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.03891 | 1 |
Mature Eggplant/Ripe Tomato | 1.47643 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.14543 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.85374 | |
1-3/M82 | 1.1684 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.52576 | |
4-3-2/M82 | 1.07134 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.3214 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.88734 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91482 | 1 |
IL2-6/WTpooled | 0.91551 | 0.473 |
IL7-5/WTpooled | 0.77781 | 1 |
IL7-3/WTpooled | 1.01552 | 1 |
IL12-4/WTpooled | 1.05317 | 1 |
IL1-4/WTpooled | 1.07325 | 1 |
WT/WTpooled | 1.02842 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06862 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94542 | 1 |
DC3000/delta hrp 6h | 1.02649 | 1 |
DC3000/delta hrp 12h | 1.02686 | 1 |
DC3000/delta hrp 24h | 1.57105 | 0.04 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12046 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.17526 | 0.246 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08242 | 1 |
Exp 36h | 1.49732 | 0.489 |
Exp 60h | 1.66383 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98165 | 1 |
Var 0h | 0.8273 | 0.933 |
Var 12h I row2-row1 | 0.99733 | 1 |
Var 12h NI row2-row1 | 1.14527 | 0.649 |
Var 36h I row2-row1 | 1.12192 | 1 |
Var 36h NI row2-row1 | 1.01679 | 1 |
Var 60h I row2-row1 | 0.76291 | 0.374 |
Var 60h NI row2-row1 | 0.845 | 0.69 |
Time course 0hI-0hNI | 1.12964 | 0.486 |
Time course 12hI-12hNI | 1.08177 | 0.467 |
Time course 36hI-36hNI | 1.43465 | 0.005 |
Time course 60hI-60hNI | 2.01906 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94788 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.94652 | 1 |
transgenic ySAMdc/azygous control (red) | 1.09254 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96092 | 0.431 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82449 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02738 | 1 |
Manapal/WT (break) | 0.79253 | 0.333 |
Manapal/WT (red) | 1.43571 | 0.15 |
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