Expression of 1-1-7.1.19.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.948020.683
27DAP/17DAP1.125240.895
39DAP/27DAP0.785110.449
41DAP/39DAP0.828090.358
42DAP/41DAP0.902731
43DAP/42DAP1.195880.867
47DAP/43DAP0.959860.825
52DAP/47DAP0.9630.837
57DAP/52DAP1.095690.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.805450.073
17DAP/reference1.038920.631
27DAP/reference1.352530.009
39DAP/reference1.47810.209
41DAP/reference1.522290.012
42DAP/reference1.389720.007
43DAP/reference1.162760.152
47DAP/reference1.217990.666
52DAP/reference0.839860.029
57DAP/reference0.83820.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.898260.153
27DAP/17DAP0.975960.821
39DAP/27DAP1.015330.824
41DAP/39DAP1.015440.914
42DAP/41DAP0.963030.649
43DAP/42DAP1.025880.324
47DAP/43DAP0.998870.998
52DAP/47DAP0.907960.389
57DAP/52DAP0.975760.705
57DAP/7DAP1.02151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.162310.246
17DAP/reference0.879470.108
27DAP/reference1.069660.453
39DAP/reference1.091110.351
41DAP/reference1.296770.06
42DAP/reference1.201220.233
43DAP/reference1.018421
47DAP/reference1.294010.124
52DAP/reference1.341540.375
57DAP/reference1.041361

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.932720.386
17DAP/reference1.74010.007
27DAP/reference1.900280.013
39DAP/reference2.265290.011
41DAP/reference1.613990.008
42DAP/reference2.144920.007
43DAP/reference1.874440.02
47DAP/reference1.626520.011
52DAP/reference2.358930.007
57DAP/reference1.238910.072

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.899880.147
17DAP/reference0.916250.305
27DAP/reference0.950190.376
39DAP/reference1.031630.889
41DAP/reference1.23160.257
42DAP/reference1.251820.062
43DAP/reference1.126580.608
47DAP/reference1.226970.025
52DAP/reference0.954870.551
57DAP/reference1.070510.604

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.031441
26DAP/20DAP1.043950.826
34DAP/26DAP1.002721
51DAP/34DAP0.969090.758
52DAP/51DAP0.983861
53DAP/52DAP1.059360.662
55DAP/53DAP0.873020.031
57DAP/55DAP0.868590.366
62DAP/57DAP1.022791
68DAP/62DAP0.923870.747
68DAP/14DAP0.79566

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.140850.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.069970.058
Mature Green Tomato/Ripe Tomato1.800080.106
Immature Eggplant/Mature Eggplant0.650650.063
Ripe Pepper/Ripe Tomato0.038911
Mature Eggplant/Ripe Tomato1.476430.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.14543
12-2/M82N/AN/A
12-4/M820.85374
1-3/M821.1684
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M820.52576
4-3-2/M821.071341
4-3/M82N/AN/A
5-3/M821.3214
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.887341

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.914821
IL2-6/WTpooled0.915510.473
IL7-5/WTpooled0.777811
IL7-3/WTpooled1.015521
IL12-4/WTpooled1.053171
IL1-4/WTpooled1.073251
WT/WTpooled1.028421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.068621

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.945421
DC3000/delta hrp 6h1.026491
DC3000/delta hrp 12h1.026861
DC3000/delta hrp 24h1.571050.04

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.120460.145
DC3000 delta B/DC3000 delta AB1.175260.246

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.082421
Exp 36h1.497320.489
Exp 60h1.663830.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.981651
Var 0h0.82730.933
Var 12h I row2-row10.997331
Var 12h NI row2-row11.145270.649
Var 36h I row2-row11.121921
Var 36h NI row2-row11.016791
Var 60h I row2-row10.762910.374
Var 60h NI row2-row10.8450.69
Time course 0hI-0hNI1.129640.486
Time course 12hI-12hNI1.081770.467
Time course 36hI-36hNI1.434650.005
Time course 60hI-60hNI2.019060.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.947880.567
transgenic ySAMdc/azygous control (breaker)0.946521
transgenic ySAMdc/azygous control (red)1.092540.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.960920.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.824490.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.027381
Manapal/WT (break)0.792530.333
Manapal/WT (red)1.435710.15