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Expression of 1-1-7.1.2.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.23910.153
27DAP/17DAP0.855650.631
39DAP/27DAP1.447090.26
41DAP/39DAP0.595990.064
42DAP/41DAP0.966861
43DAP/42DAP1.146590.929
47DAP/43DAP0.778770.321
52DAP/47DAP1.081980.957
57DAP/52DAP1.224380.894

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.244350.052
17DAP/reference1.487570.017
27DAP/reference1.50360.045
39DAP/reference1.580680.035
41DAP/reference1.26760.073
42DAP/reference1.36190.001
43DAP/reference1.251260.069
47DAP/reference1.337920.001
52DAP/reference1.059840.991
57DAP/reference1.341190.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.602460.036
27DAP/17DAP1.010510.968
39DAP/27DAP0.716080.033
41DAP/39DAP1.258230.801
42DAP/41DAP1.070110.893
43DAP/42DAP0.696710.022
47DAP/43DAP1.035770.812
52DAP/47DAP1.044060.823
57DAP/52DAP1.025931
57DAP/7DAP0.940821

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.416730.033
17DAP/reference1.976370.006
27DAP/reference1.952750.006
39DAP/reference1.866730.005
41DAP/reference1.666130.008
42DAP/reference1.684270.014
43DAP/reference1.491220.006
47DAP/reference1.567150.014
52DAP/reference2.044290.007
57DAP/reference2.046910.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02831
17DAP/reference1.728750.007
27DAP/reference1.82880.013
39DAP/reference1.870170.011
41DAP/reference1.528290.011
42DAP/reference1.923120.008
43DAP/reference1.251370.356
47DAP/reference1.995420.008
52DAP/reference1.235840.032
57DAP/reference1.116250.654

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.248730.029
17DAP/reference1.093190.462
27DAP/reference1.678290.016
39DAP/reference1.64580.005
41DAP/reference1.461910.009
42DAP/reference1.486690.016
43DAP/reference1.604480.032
47DAP/reference1.155070.562
52DAP/reference1.370610.053
57DAP/reference1.662160.013

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.094590.966
26DAP/20DAP1.587830.374
34DAP/26DAP0.990740.988
51DAP/34DAP0.648860.075
52DAP/51DAP0.784050.151
53DAP/52DAP1.003910.97
55DAP/53DAP0.825060.303
57DAP/55DAP1.422990.274
62DAP/57DAPN/AN/A
68DAP/62DAP1.425490.788
68DAP/14DAP0.855521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.083330.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.036690.666
Mature Green Tomato/Ripe Tomato1.74660.237
Immature Eggplant/Mature Eggplant1.049090.554
Ripe Pepper/Ripe Tomato0.673160.224
Mature Eggplant/Ripe Tomato1.282920.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.694280.651
1-1-2/M821.310870.977
12-2/M821.293160.61
12-4/M821.024621
1-3/M821.897940.26
2-1-1/M821.041131
2-1/M820.602040.322
2-6/M820.803441
3-2/M820.96628N/A
4-1-1/M821.214451
4-1/M821.553151
4-3-2/M821.269890.508
4-3/M821.166611
5-3/M821.222351
6-2/M821.188651
6-3/M821.139891
7-1/M821.100070.87
7-2/M821.327990.385
9-3-2/M821.083191

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.086840.531
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.882920.294
IL12-4/WTpooled0.942811
IL1-4/WTpooled1.01298N/A
WT/WTpooled0.951421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.921410.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.069020.875
DC3000/delta hrp 6h0.974060.95
DC3000/delta hrp 12h0.897861
DC3000/delta hrp 24h1.167960.165

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.285310.05
DC3000 delta B/DC3000 delta AB1.171910.372

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.963851
Exp 36h1.297051
Exp 60h1.111761

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992611
Var 0h1.440050.936
Var 12h I row2-row10.926270.77
Var 12h NI row2-row11.203831
Var 36h I row2-row11.125160.339
Var 36h NI row2-row10.877340.706
Var 60h I row2-row10.96981
Var 60h NI row2-row10.80450.298
Time course 0hI-0hNI0.867440.145
Time course 12hI-12hNI1.061180.216
Time course 36hI-36hNI1.390690.089
Time course 60hI-60hNI1.696160.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.004171
transgenic ySAMdc/azygous control (breaker)0.892290.49
transgenic ySAMdc/azygous control (red)1.018031

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.440310.051

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.888430.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.89581
Manapal/WT (break)0.996571
Manapal/WT (red)1.4040.126