Expression of 1-1-7.1.2.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92792 | 0.496 |
27DAP/17DAP | 0.80217 | 0.478 |
39DAP/27DAP | 0.9426 | 0.631 |
41DAP/39DAP | 1.21307 | 0.344 |
42DAP/41DAP | 1.10107 | 0.931 |
43DAP/42DAP | 1.01097 | 0.937 |
47DAP/43DAP | 1.10995 | 0.727 |
52DAP/47DAP | 0.80057 | 0.538 |
57DAP/52DAP | 0.93395 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99234 | 0.693 |
17DAP/reference | 1.04068 | 0.412 |
27DAP/reference | 1.11677 | 0.103 |
39DAP/reference | 1.06097 | 0.386 |
41DAP/reference | 0.90417 | 0.049 |
42DAP/reference | 0.88095 | 0.004 |
43DAP/reference | 0.98364 | 0.708 |
47DAP/reference | 0.98774 | 0.473 |
52DAP/reference | 0.98522 | 0.546 |
57DAP/reference | 1.0089 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0616 | 0.536 |
27DAP/17DAP | 0.96586 | 0.537 |
39DAP/27DAP | 0.98292 | 0.795 |
41DAP/39DAP | 1.0734 | 0.59 |
42DAP/41DAP | 1.00308 | 0.907 |
43DAP/42DAP | 1.04444 | 0.478 |
47DAP/43DAP | 0.98575 | 0.911 |
52DAP/47DAP | 1.03642 | 0.851 |
57DAP/52DAP | 0.9576 | 0.577 |
57DAP/7DAP | 1.03656 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84747 | 0.062 |
17DAP/reference | 0.82021 | 0.011 |
27DAP/reference | 0.87736 | 0.016 |
39DAP/reference | 0.93698 | 0.025 |
41DAP/reference | 0.97423 | 0.412 |
42DAP/reference | 0.90062 | 0.033 |
43DAP/reference | 0.87494 | 0.011 |
47DAP/reference | 0.92331 | 0.168 |
52DAP/reference | 0.91965 | 0.126 |
57DAP/reference | 0.85898 | 0.026 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9694 | 0.564 |
17DAP/reference | 0.9204 | 0.23 |
27DAP/reference | 0.89419 | 0.129 |
39DAP/reference | 0.99583 | 0.603 |
41DAP/reference | 0.90294 | 0.096 |
42DAP/reference | 0.80878 | 0.023 |
43DAP/reference | 0.93219 | 0.269 |
47DAP/reference | 0.94654 | 0.221 |
52DAP/reference | 1.00138 | 0.713 |
57DAP/reference | 0.85516 | 0.03 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90022 | 0.074 |
17DAP/reference | 0.91295 | 0.205 |
27DAP/reference | 0.94213 | 0.078 |
39DAP/reference | 0.89448 | 0.009 |
41DAP/reference | 0.9091 | 0.119 |
42DAP/reference | 0.82057 | 0.028 |
43DAP/reference | 0.85089 | 0.081 |
47DAP/reference | 0.88063 | 0.114 |
52DAP/reference | 0.87037 | 0.25 |
57DAP/reference | 0.76723 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14544 | 0.966 |
26DAP/20DAP | 1.03865 | 0.905 |
34DAP/26DAP | 1.10212 | 1 |
51DAP/34DAP | 1.13894 | 0.118 |
52DAP/51DAP | 0.9808 | 1 |
53DAP/52DAP | 1.06687 | 0.868 |
55DAP/53DAP | 0.87957 | 0.125 |
57DAP/55DAP | 1.14637 | 0.643 |
62DAP/57DAP | 1.11085 | |
68DAP/62DAP | 1.08784 | 0.767 |
68DAP/14DAP | 1.63086 | 0.019 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.86155 | 0.145 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.51459 | 0.11 |
Mature Green Tomato/Ripe Tomato | 1.96046 | 0.015 |
Immature Eggplant/Mature Eggplant | 1.12989 | 0.439 |
Ripe Pepper/Ripe Tomato | 5.01779 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.20863 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.23181 | 0.877 |
1-1-2/M82 | 0.99143 | 1 |
12-2/M82 | 0.86599 | 0.678 |
12-4/M82 | 0.70079 | 0.319 |
1-3/M82 | 1.16384 | |
2-1-1/M82 | 0.89584 | 1 |
2-1/M82 | 1.13533 | 1 |
2-6/M82 | 0.91759 | 1 |
3-2/M82 | 0.97273 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.89227 | 1 |
4-3-2/M82 | 0.76718 | 0.487 |
4-3/M82 | 0.86325 | 1 |
5-3/M82 | 1.49949 | 0.496 |
6-2/M82 | 0.92863 | 1 |
6-3/M82 | 1.2596 | 1 |
7-1/M82 | 1.19322 | 0.539 |
7-2/M82 | 0.94384 | 0.881 |
9-3-2/M82 | 0.83086 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.79854 | 0.321 |
IL2-6/WTpooled | 1.00259 | 1 |
IL7-5/WTpooled | 1.18071 | 0.792 |
IL7-3/WTpooled | 0.87371 | 0.298 |
IL12-4/WTpooled | 0.98947 | 1 |
IL1-4/WTpooled | 0.95472 | 0.834 |
WT/WTpooled | 0.94208 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.97091 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.81713 | 0.62 |
DC3000/delta hrp 6h | 0.93905 | 0.95 |
DC3000/delta hrp 12h | 0.94968 | 1 |
DC3000/delta hrp 24h | 0.90684 | 0.412 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.89274 | 0.052 |
DC3000 delta B/DC3000 delta AB | 0.88529 | 0.167 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.73798 | 1 |
Exp 36h | 0.70103 | 0.406 |
Exp 60h | 0.66588 | 0.253 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96177 | 1 |
Var 0h | 0.87682 | 0.933 |
Var 12h I row2-row1 | 0.89737 | 0.514 |
Var 12h NI row2-row1 | 0.97885 | 0.906 |
Var 36h I row2-row1 | 0.98911 | 1 |
Var 36h NI row2-row1 | 1.01626 | 1 |
Var 60h I row2-row1 | 0.99576 | 1 |
Var 60h NI row2-row1 | 1.07913 | 0.904 |
Time course 0hI-0hNI | 0.91117 | 0.323 |
Time course 12hI-12hNI | 1.00364 | 1 |
Time course 36hI-36hNI | 0.89796 | 0.024 |
Time course 60hI-60hNI | 0.54772 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99842 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.8914 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.03204 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.13284 | 0.051 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.85615 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.35741 | 0.14 |
Manapal/WT (break) | 1.18573 | 1 |
Manapal/WT (red) | 1.16581 | 0.413 |
|
|