Expression of 1-1-7.1.2.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.927920.496
27DAP/17DAP0.802170.478
39DAP/27DAP0.94260.631
41DAP/39DAP1.213070.344
42DAP/41DAP1.101070.931
43DAP/42DAP1.010970.937
47DAP/43DAP1.109950.727
52DAP/47DAP0.800570.538
57DAP/52DAP0.933950.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.992340.693
17DAP/reference1.040680.412
27DAP/reference1.116770.103
39DAP/reference1.060970.386
41DAP/reference0.904170.049
42DAP/reference0.880950.004
43DAP/reference0.983640.708
47DAP/reference0.987740.473
52DAP/reference0.985220.546
57DAP/reference1.00891

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.06160.536
27DAP/17DAP0.965860.537
39DAP/27DAP0.982920.795
41DAP/39DAP1.07340.59
42DAP/41DAP1.003080.907
43DAP/42DAP1.044440.478
47DAP/43DAP0.985750.911
52DAP/47DAP1.036420.851
57DAP/52DAP0.95760.577
57DAP/7DAP1.036561

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.847470.062
17DAP/reference0.820210.011
27DAP/reference0.877360.016
39DAP/reference0.936980.025
41DAP/reference0.974230.412
42DAP/reference0.900620.033
43DAP/reference0.874940.011
47DAP/reference0.923310.168
52DAP/reference0.919650.126
57DAP/reference0.858980.026

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.96940.564
17DAP/reference0.92040.23
27DAP/reference0.894190.129
39DAP/reference0.995830.603
41DAP/reference0.902940.096
42DAP/reference0.808780.023
43DAP/reference0.932190.269
47DAP/reference0.946540.221
52DAP/reference1.001380.713
57DAP/reference0.855160.03

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.900220.074
17DAP/reference0.912950.205
27DAP/reference0.942130.078
39DAP/reference0.894480.009
41DAP/reference0.90910.119
42DAP/reference0.820570.028
43DAP/reference0.850890.081
47DAP/reference0.880630.114
52DAP/reference0.870370.25
57DAP/reference0.767230.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.145440.966
26DAP/20DAP1.038650.905
34DAP/26DAP1.102121
51DAP/34DAP1.138940.118
52DAP/51DAP0.98081
53DAP/52DAP1.066870.868
55DAP/53DAP0.879570.125
57DAP/55DAP1.146370.643
62DAP/57DAP1.11085
68DAP/62DAP1.087840.767
68DAP/14DAP1.630860.019

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.861550.145

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.514590.11
Mature Green Tomato/Ripe Tomato1.960460.015
Immature Eggplant/Mature Eggplant1.129890.439
Ripe Pepper/Ripe Tomato5.017790.256
Mature Eggplant/Ripe Tomato1.208631

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.231810.877
1-1-2/M820.991431
12-2/M820.865990.678
12-4/M820.700790.319
1-3/M821.16384
2-1-1/M820.895841
2-1/M821.135331
2-6/M820.917591
3-2/M820.97273
4-1-1/M82N/AN/A
4-1/M820.892271
4-3-2/M820.767180.487
4-3/M820.863251
5-3/M821.499490.496
6-2/M820.928631
6-3/M821.25961
7-1/M821.193220.539
7-2/M820.943840.881
9-3-2/M820.830860.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.798540.321
IL2-6/WTpooled1.002591
IL7-5/WTpooled1.180710.792
IL7-3/WTpooled0.873710.298
IL12-4/WTpooled0.989471
IL1-4/WTpooled0.954720.834
WT/WTpooled0.942081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.970910.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.817130.62
DC3000/delta hrp 6h0.939050.95
DC3000/delta hrp 12h0.949681
DC3000/delta hrp 24h0.906840.412

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.892740.052
DC3000 delta B/DC3000 delta AB0.885290.167

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.737981
Exp 36h0.701030.406
Exp 60h0.665880.253

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.961771
Var 0h0.876820.933
Var 12h I row2-row10.897370.514
Var 12h NI row2-row10.978850.906
Var 36h I row2-row10.989111
Var 36h NI row2-row11.016261
Var 60h I row2-row10.995761
Var 60h NI row2-row11.079130.904
Time course 0hI-0hNI0.911170.323
Time course 12hI-12hNI1.003641
Time course 36hI-36hNI0.897960.024
Time course 60hI-60hNI0.547720.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.998421
transgenic ySAMdc/azygous control (breaker)0.89140.173
transgenic ySAMdc/azygous control (red)1.032041

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.132840.051

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.856150.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.357410.14
Manapal/WT (break)1.185731
Manapal/WT (red)1.165810.413