Expression of 1-1-7.1.2.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.83690.389
27DAP/17DAP0.942360.923
39DAP/27DAP1.402740.768
41DAP/39DAP0.886240.518
42DAP/41DAP0.876371
43DAP/42DAP1.047841
47DAP/43DAP1.134120.633
52DAP/47DAP1.448350.41
57DAP/52DAP0.785580.734

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.87690.136
17DAP/reference0.923020.368
27DAP/reference0.924690.359
39DAP/reference1.123030.256
41DAP/reference1.080290.287
42DAP/reference1.031781
43DAP/reference0.835750.054
47DAP/reference0.968870.366
52DAP/reference0.826130.071
57DAP/reference0.94210.308

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.09170.422
27DAP/17DAP0.951870.878
39DAP/27DAP1.045420.758
41DAP/39DAP1.213510.682
42DAP/41DAP0.953760.637
43DAP/42DAP0.979460.774
47DAP/43DAP0.888530.534
52DAP/47DAP0.929510.729
57DAP/52DAP0.951410.657
57DAP/7DAP1.201811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.897840.361
17DAP/reference1.041490.896
27DAP/reference1.098040.301
39DAP/reference1.170690.073
41DAP/reference1.184180.018
42DAP/reference1.325830.076
43DAP/reference1.322130.032
47DAP/reference1.056540.932
52DAP/reference1.460550.019
57DAP/reference1.809120.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.963010.607
17DAP/reference1.129120.348
27DAP/reference1.448940.068
39DAP/reference1.192720.119
41DAP/reference1.396660.006
42DAP/reference1.506280.017
43DAP/reference2.056380.012
47DAP/reference1.635160.008
52DAP/reference1.170750.079
57DAP/reference1.203080.033

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.013930.75
17DAP/reference1.268160.092
27DAP/reference1.109780.188
39DAP/reference1.071060.512
41DAP/reference1.018570.867
42DAP/reference1.238110.111
43DAP/reference1.00940.827
47DAP/reference1.122260.519
52DAP/reference0.886040.232
57DAP/reference1.271590.095

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.201060.966
26DAP/20DAP0.723850.317
34DAP/26DAP0.859620.565
51DAP/34DAP0.846480.522
52DAP/51DAP1.104940.396
53DAP/52DAP0.985590.909
55DAP/53DAP1.193960.266
57DAP/55DAP1.003790.961
62DAP/57DAP3.11577
68DAP/62DAP3.6782
68DAP/14DAP1.305410.295

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.12620.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.334240.106
Mature Green Tomato/Ripe Tomato2.361480.185
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.85379
Mature Eggplant/Ripe Tomato0.37268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.57009
1-1-2/M821.008271
12-2/M820.87531
12-4/M820.788860.619
1-3/M820.901261
2-1-1/M821.249220.764
2-1/M821.94263
2-6/M821.82657
3-2/M820.60774
4-1-1/M821.88529
4-1/M821.773360.287
4-3-2/M82N/AN/A
4-3/M820.46289
5-3/M821.136541
6-2/M820.865041
6-3/M821.027551
7-1/M820.741371
7-2/M820.85650.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.182220.277
IL2-6/WTpooled0.955251
IL7-5/WTpooled1.050381
IL7-3/WTpooled0.971061
IL12-4/WTpooled1.002511
IL1-4/WTpooled1.078161
WT/WTpooled1.029121

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.854640.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.024410.921
DC3000/delta hrp 6h1.161531
DC3000/delta hrp 12h1.133721
DC3000/delta hrp 24h1.148070.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.011650.726

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.397771
Exp 36h1.019120.943
Exp 60h1.057921

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008261
Var 0h0.82340.98
Var 12h I row2-row11.252650.406
Var 12h NI row2-row10.901010.627
Var 36h I row2-row11.226950.742
Var 36h NI row2-row10.874140.706
Var 60h I row2-row10.48532
Var 60h NI row2-row11.108730.904
Time course 0hI-0hNI1.006771
Time course 12hI-12hNI0.90150.334
Time course 36hI-36hNI1.056930.908
Time course 60hI-60hNI0.975570.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.914050.529
transgenic ySAMdc/azygous control (breaker)2.474170.166
transgenic ySAMdc/azygous control (red)2.125510.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.029440.334

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.715020.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.868160.14
Manapal/WT (break)1.519460.381
Manapal/WT (red)2.807940.164