Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.1.20.8

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.98084	0.811
27DAP/17DAP	1.28021	0.735
39DAP/27DAP	0.95907	0.682
41DAP/39DAP	0.97685	0.909
42DAP/41DAP	0.86618	1
43DAP/42DAP	0.90631	0.841
47DAP/43DAP	0.82276	0.449
52DAP/47DAP	1.12089	0.811
57DAP/52DAP	0.91925	0.919

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.00883	1
17DAP/reference	0.74539	0.12
27DAP/reference	1.08941	0.405
39DAP/reference	1.17698	0.393
41DAP/reference	1.47324	0.058
42DAP/reference	1.11157	0.093
43DAP/reference	0.52333	0.143
47DAP/reference	1.08806	0.018
52DAP/reference	0.89536	0.043
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.2455	0.492
27DAP/17DAP	1.2324	0.573
39DAP/27DAP	1.20938	0.3
41DAP/39DAP	1.12034	0.853
42DAP/41DAP	0.89955	0.412
43DAP/42DAP	0.91618	0.447
47DAP/43DAP	0.99778	0.947
52DAP/47DAP	1.27461	0.432
57DAP/52DAP	1.35495	0.202
57DAP/7DAP	1.00832	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.93781	0.246
17DAP/reference	0.78527	0.013
27DAP/reference	0.78057	0.015
39DAP/reference	0.72878	0.02
41DAP/reference	0.8551	0.079
42DAP/reference	0.71674	0.01
43DAP/reference	0.87024	0.115
47DAP/reference	0.89874	0.293
52DAP/reference	0.87177	0.072
57DAP/reference	0.84403	0.059

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98931	0.848
17DAP/reference	1.00861	0.851
27DAP/reference	1.1569	0.735
39DAP/reference	1.00173	1
41DAP/reference	0.93545	0.242
42DAP/reference	0.95429	0.237
43DAP/reference	1.21397	0.526
47DAP/reference	0.88881	0.188
52DAP/reference	1.04858	0.559
57DAP/reference	1.03147	0.771

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.78566	0.034
17DAP/reference	0.89622	0.342
27DAP/reference	0.78689	0.108
39DAP/reference	0.82788	0.022
41DAP/reference	0.9097	0.264
42DAP/reference	0.84539	0.059
43DAP/reference	1.03826	0.767
47DAP/reference	1.03187	0.63
52DAP/reference	0.83708	0.193
57DAP/reference	0.89961	0.31

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.92858	1
26DAP/20DAP	1.15254	0.635
34DAP/26DAP	0.90603	0.783
51DAP/34DAP	0.98412	0.893
52DAP/51DAP	0.90064	1
53DAP/52DAP	0.99663	0.929
55DAP/53DAP	0.98379	0.746
57DAP/55DAP	0.87806	0.527
62DAP/57DAP	1.00241	1
68DAP/62DAP	0.99276	0.885
68DAP/14DAP	1.07548	0.436

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.11726	1

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	1.12189	0.908
Mature Green Tomato/Ripe Tomato	1.01612	0.898
Immature Eggplant/Mature Eggplant	0.80908	0.077
Ripe Pepper/Ripe Tomato	0.71735	0.293
Mature Eggplant/Ripe Tomato	0.70799	1

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.80663	0.883
1-1-2/M82	0.98942	1
12-2/M82	1.39566
12-4/M82	1.00078	1
1-3/M82	0.67732	0.286
2-1-1/M82	1.00528	1
2-1/M82	1.10394
2-6/M82	0.86849	0.501
3-2/M82	1.02141
4-1-1/M82	N/A	N/A
4-1/M82	1.58587
4-3-2/M82	0.76445
4-3/M82	0.87588	0.72
5-3/M82	0.92449	0.374
6-2/M82	0.8959	1
6-3/M82	1.08055	1
7-1/M82	1	1
7-2/M82	0.94224	0.881
9-3-2/M82	0.90731	0.449

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.06769	1
IL2-6/WTpooled	1.03943	1
IL7-5/WTpooled	1.43223	0.792
IL7-3/WTpooled	1.08629	1
IL12-4/WTpooled	1.54886	0.483
IL1-4/WTpooled	1.1836	1
WT/WTpooled	0.91914	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.04642	0.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.03273	0.921
DC3000/delta hrp 6h	0.9407	0.95
DC3000/delta hrp 12h	0.96952	1
DC3000/delta hrp 24h	0.96942	0.887

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.0627	1
Exp 36h	1.26982	1
Exp 60h	1.03415	1

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.96833	1
Var 0h	N/A	N/A
Var 12h I row2-row1	1.35873	0.272
Var 12h NI row2-row1	0.93968	0.82
Var 36h I row2-row1	1.12581	0.742
Var 36h NI row2-row1	0.88837	1
Var 60h I row2-row1	1.13234	1
Var 60h NI row2-row1	0.56832	0.63
Time course 0hI-0hNI	0.94045	0.764
Time course 12hI-12hNI	1.0909	0.693
Time course 36hI-36hNI	1.52151	0.006
Time course 60hI-60hNI	10.4407	0.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.0787	0.571
transgenic ySAMdc/azygous control (breaker)	0.88867	0.173
transgenic ySAMdc/azygous control (red)	1.03024	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	0.98237	0.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.11157	1

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	1.09314	0.307
Manapal/WT (break)	0.87687	1
Manapal/WT (red)	1.02139	1